Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C14
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              28   0.12 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.66 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.87 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 420 GLGSNVTITPYSSASLCK-M*RATQRSSPACTPIEGPTWNSHCE 292
           G+G    ++P S+ ++C  M +  +R  P C    G  + +HCE
Sbjct: 88  GIGKECELSPNSTIAVCVCMRKCPRRHRPVCAS-NGKIYANHCE 130


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -3

Query: 354 TQRSSPACTPIEGPTW--NSHCEGITSAF 274
           T    P   P    TW  N +C GITSA+
Sbjct: 95  TGNGGPLLAPYPDWTWAKNENCSGITSAY 123


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 383  EEYGVIVTFDPKPVQDWNG 439
            +++ + VT+ P P +DWNG
Sbjct: 989  DQHTLKVTWKPPPREDWNG 1007


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 611 ASINDFSAGVANRGSSIRIPRSVAEDXKGYLEDRRPASNCDP 736
           A+  DFS GV N   S ++  +   +    LED      C+P
Sbjct: 206 ATPTDFSMGVKNNHVSSKVEGNGVHEENSPLEDN---IKCEP 244


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 195 PTKSLPETLSKPTIDAVFMLAYRLPVQTLK*C-LHSGSSKSVPQ 323
           PT+     +    +DA +M+A+  P+  +  C +++  ++ +P+
Sbjct: 799 PTREDNLLVCNSYVDASYMIAFAYPIMLIVVCTVYAVLTRKIPE 842


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,769
Number of Sequences: 438
Number of extensions: 5215
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)