Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C13
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    31   0.16 
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac...    30   0.49 
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    27   2.6  
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    27   4.6  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   8.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   8.0  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   8.0  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +2

Query: 500 STGPIIVKNAIKSWRATKEFNYKMFKRLYEETGGSYESLDDGCQFLNFKTDLFSLKEVFN 679
           ++ PI  ++++KS +  +  NY   K+   E   SY ++DD  +  NF+ +  SL+ + +
Sbjct: 22  NSSPIDYEHSLKSLQDERTLNYPN-KQFNSENPSSYYNMDDSGELCNFELEKDSLESMIH 80


>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
           Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 419 NCAYCENVTKPIVLFNVTRHEFNKYAYST----GPIIVKNAIKSWRATKEFN 562
           N    E +++PI   N+T+ EF  + + T    GP +    ++ W+  K FN
Sbjct: 74  NQIMAERISEPIHCENITKVEFILHHFDTTARYGPYLGMTRMQRWKRAKNFN 125


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 350 NFMSARCLVPSNYLIWEATRPLANCAYCENVTK 448
           NF     L+P N   W A   L NC+ C N  K
Sbjct: 330 NFTYTLDLIPCNATSWSAYSLLKNCSDCANSYK 362


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 455 VLFNVTRHEFNKYAYSTGP--IIVKNAIKSWRATKEFNYKMFKRLYEETGGSYESLDDG 625
           ++  V + EFN  +       I+ ++ +  W+A  E NY+  + ++E  G      ++G
Sbjct: 68  LILQVLQDEFNVGSIEDDSPYILAQDLVNVWKAACEDNYEPIREIHERLGKQLLEKEEG 126


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 584 YEETGGSYESLDDGCQFLNFKTDLFS 661
           Y++   S E +DD    L FKT++FS
Sbjct: 131 YQQVAQSIEDIDDEQWDLTFKTNIFS 156


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 546 QPKNLIIRCLKDCMKRLEVAMRAWMTDVNS*ILKLTCLA*RKFSI 680
           +PK  I  CL DC+K + +   +WM      + +L+ LA R  S+
Sbjct: 662 EPKKFI--CLGDCVKEVSLNATSWMLFYRWDVHELSNLAERFVSL 704


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 748 MTVTPSNIPRFLSWFIFHSFFRHIEN 671
           MTVT +N+ R L WF F    + IEN
Sbjct: 1   MTVTKTNLNRHLDWF-FRESPQKIEN 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,024
Number of Sequences: 5004
Number of extensions: 66062
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)