Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C13
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    31   1.4  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    31   1.4  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    31   1.4  
U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF016656-2|AAB66038.2|  202|Caenorhabditis elegans Hypothetical ...    29   5.7  

>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -3

Query: 754  FWMTVTPSNIPRFLS-WFIFHSFFRHIENFL*AKQVSFKIQELTSVIQALIATSSLFIQS 578
            F+ T T S   RFLS WF+ ++    +  FL      F IQ   SVI  ++A SSL + +
Sbjct: 973  FFATNTTSCYLRFLSAWFLSYASTLPLIYFL-----VFNIQNTKSVIPIILAISSLSV-T 1026

Query: 577  FKHLIIKF 554
            F +L+  F
Sbjct: 1027 FPNLVASF 1034


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -3

Query: 754  FWMTVTPSNIPRFLS-WFIFHSFFRHIENFL*AKQVSFKIQELTSVIQALIATSSLFIQS 578
            F+ T T S   RFLS WF+ ++    +  FL      F IQ   SVI  ++A SSL + +
Sbjct: 973  FFATNTTSCYLRFLSAWFLSYASTLPLIYFL-----VFNIQNTKSVIPIILAISSLSV-T 1026

Query: 577  FKHLIIKF 554
            F +L+  F
Sbjct: 1027 FPNLVASF 1034


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -3

Query: 754  FWMTVTPSNIPRFLS-WFIFHSFFRHIENFL*AKQVSFKIQELTSVIQALIATSSLFIQS 578
            F+ T T S   RFLS WF+ ++    +  FL      F IQ   SVI  ++A SSL + +
Sbjct: 973  FFATNTTSCYLRFLSAWFLSYASTLPLIYFL-----VFNIQNTKSVIPIILAISSLSV-T 1026

Query: 577  FKHLIIKF 554
            F +L+  F
Sbjct: 1027 FPNLVASF 1034


>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 548 TKEFNYKMFKRLYEETGGSYESLDDGCQFLNFKTDLFSLKEVFNMPE 688
           T+ F+Y+M + L       + +L    +FLN K +  +++E+ N  E
Sbjct: 195 TENFSYQMLEALTYHVSKRWLNLGTAVEFLNIKRNATTIEELGNFKE 241


>AF016656-2|AAB66038.2|  202|Caenorhabditis elegans Hypothetical
           protein C35A11.2 protein.
          Length = 202

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 617 DDGCQFLNFKTDLFSLKEVFNMPEERV--KNEPGQKPWYVGWGNCHPEILSKVRQYYNVP 790
           DD  + +     +FS  EVFN  +ER+  + + G +P Y       PE+L+    YYN P
Sbjct: 112 DDSVEEIQLANLVFSSDEVFNSIQERIIEQMKIGNRPDY------FPEVLT---VYYNNP 162

Query: 791 EFL 799
           E +
Sbjct: 163 ELI 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,369
Number of Sequences: 27780
Number of extensions: 361103
Number of successful extensions: 989
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)