Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C13
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   8.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.4  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 152 RKRSLKRRICAVQKTAIANGLNNFEMKQFDLICDYNHND 268
           R R  K R  + +   I++  NN++   ++   +YN+N+
Sbjct: 299 RSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNYNNNN 337


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 77  TINEIN*NFNYLRTMTTLWK*IMRIRKRSLK 169
           T+NE+N N NY+    T    I+ +    +K
Sbjct: 52  TLNELNFNLNYVNKGVTYKHTIIEMDSNPIK 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,030
Number of Sequences: 438
Number of extensions: 4894
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)