Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C11
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92826-6|CAM06583.1|  111|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AF024498-4|AAF39805.2|  319|Caenorhabditis elegans Serpentine re...    27   4.0  
AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z92826-6|CAM06583.1|  111|Caenorhabditis elegans Hypothetical
           protein C18D11.9 protein.
          Length = 111

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 106 WGWGWRKP 83
           WGWGWR+P
Sbjct: 76  WGWGWRRP 83


>AF024498-4|AAF39805.2|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein102 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 29  ALSTCSTNYSPSLLCWW 79
           ++ TC+  Y+P LL WW
Sbjct: 162 SVDTCNLTYNPELLNWW 178


>AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical
           protein T27C4.1 protein.
          Length = 243

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 85  PRPPTEQRG*IICRTC 38
           P PP ++RG ++CR C
Sbjct: 71  PPPPAQRRGLLVCRIC 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,929,279
Number of Sequences: 27780
Number of extensions: 56451
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)