Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_C09
(754 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 242 6e-63
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 237 2e-61
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 223 4e-57
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 220 3e-56
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 219 5e-56
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 215 7e-55
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 215 7e-55
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 209 5e-53
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 208 8e-53
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 207 2e-52
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 202 7e-51
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 192 1e-47
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 191 1e-47
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 190 4e-47
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 187 2e-46
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 186 4e-46
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 180 3e-44
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 180 4e-44
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 176 6e-43
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 175 1e-42
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 175 1e-42
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 171 2e-41
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 169 8e-41
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 167 3e-40
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 166 6e-40
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 161 2e-38
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 157 3e-37
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 156 5e-37
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 154 2e-36
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 152 8e-36
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 148 2e-34
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 144 2e-33
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 143 4e-33
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 140 4e-32
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 125 1e-27
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 125 1e-27
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 120 3e-26
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 116 5e-25
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 115 1e-24
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 114 3e-24
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 110 3e-23
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 108 1e-22
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 108 2e-22
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 107 2e-22
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 105 2e-21
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 104 3e-21
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 103 4e-21
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 102 8e-21
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 101 1e-20
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 101 3e-20
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 100 3e-20
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 99 1e-19
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 98 2e-19
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 96 7e-19
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 95 1e-18
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 95 2e-18
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 94 3e-18
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 91 3e-17
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 90 5e-17
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 90 5e-17
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 88 2e-16
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 87 3e-16
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 87 4e-16
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 87 4e-16
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 87 6e-16
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 86 8e-16
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 85 1e-15
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 85 1e-15
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 85 2e-15
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 84 3e-15
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 83 5e-15
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 83 9e-15
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 3e-14
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 81 4e-14
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 80 5e-14
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 80 5e-14
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 80 5e-14
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 78 2e-13
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 78 3e-13
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 78 3e-13
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 77 5e-13
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 76 8e-13
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 75 2e-12
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 75 3e-12
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 74 3e-12
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 73 6e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 73 1e-11
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 68 2e-10
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 68 3e-10
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 64 4e-09
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 1e-07
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 59 1e-07
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 59 1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 59 1e-07
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 58 2e-07
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 51 3e-05
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 4e-04
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 46 0.001
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 40 0.050
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 38 0.27
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 35 1.9
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 34 4.3
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 33 10.0
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 10.0
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ... 33 10.0
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 242 bits (593), Expect = 6e-63
Identities = 127/210 (60%), Positives = 135/210 (64%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R G PGSLIG QIYN VTAHA N L+PL+LGAPD+AFPR+
Sbjct: 11 RTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRM 70
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 71 NNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 130
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
SFDQ+PLF+ AVGITA AGAIT+LLTDRNLNT
Sbjct: 131 ILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNT 190
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILI 734
SFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 191 SFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 237 bits (580), Expect = 2e-61
Identities = 125/206 (60%), Positives = 133/206 (64%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA G PGSLIG QIYN VTAHA N LVPL+LGAPD+AFPR+
Sbjct: 35 RAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRM 94
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 95 NNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 154
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
SFDQ+PLFV AVGITAF AGAIT+LLTDRNLNT
Sbjct: 155 ILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNT 214
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEV 722
SFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 215 SFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 223 bits (545), Expect = 4e-57
Identities = 120/216 (55%), Positives = 133/216 (61%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA G PG+L+G QIYN VTAHA N LVPL++GAPD+AFPR+
Sbjct: 39 RAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 98
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHLAGISS
Sbjct: 99 NNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISS 158
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S Q PLFV +V ITA A IT+LLTDRNLNT
Sbjct: 159 ILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNT 218
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+FFDPAGGGDPILYQHLF FFGHPEVYILILPG G+
Sbjct: 219 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGM 254
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 220 bits (538), Expect = 3e-56
Identities = 120/214 (56%), Positives = 138/214 (64%)
Frame = -1
Query: 697 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 518
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 517 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 338
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 337 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTXX 158
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 157 L*I*AAPINEPGLPNXARXKRLKDVPMMPEXRPK 56
L I + PI PG PN AR K L DVP MP PK
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPK 212
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 219 bits (536), Expect = 5e-56
Identities = 117/216 (54%), Positives = 130/216 (60%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA PG+L+G QIYN VTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S Q PLFV AV +TA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+FFDPAGGGDPILYQHLF FFGHPEVYILILPG GI
Sbjct: 218 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGI 253
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 215 bits (526), Expect = 7e-55
Identities = 114/216 (52%), Positives = 130/216 (60%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA PG+L+G QIYN VTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ Q PLFV +V +TA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+FFDPAGGGDPILYQHLF FFGHPEVYILILPG G+
Sbjct: 218 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGM 253
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 215 bits (526), Expect = 7e-55
Identities = 114/216 (52%), Positives = 130/216 (60%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA G PG+L+G IYN VTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F +VE GAGTG TVYPPL+ N +H G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSS 157
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ Q PLFV +V ITA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+FFDPAGGGDPILYQHLF FFGHPEVYILILPG G+
Sbjct: 218 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGM 253
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 209 bits (511), Expect = 5e-53
Identities = 110/216 (50%), Positives = 127/216 (58%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R G PGSLIG QIYN VT+HA N L+PL+LG+PD++FPR+
Sbjct: 22 RLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRM 81
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 82 NNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASS 141
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ D++ LF +V ITA AGAIT+LLTDRN+NT
Sbjct: 142 IMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNT 201
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
SFFDP+GGGDPILYQHLF FFGHPEVYILILPG GI
Sbjct: 202 SFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGI 237
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 208 bits (509), Expect = 8e-53
Identities = 110/218 (50%), Positives = 129/218 (59%), Gaps = 2/218 (0%)
Frame = +3
Query: 105 RAXXGNPGSLI--GAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R PG I G Q+YN +TAHA N VP+++GAPD+AFP
Sbjct: 39 RMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFP 98
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+NNI F +VE G+GTG TVYPPLS +H G +VDLAIFSLHL+G+
Sbjct: 99 RLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGV 158
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV +V +TAF AGAIT+LLTDRN
Sbjct: 159 SSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNF 218
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG GI
Sbjct: 219 NTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGI 256
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 207 bits (506), Expect = 2e-52
Identities = 108/207 (52%), Positives = 125/207 (60%)
Frame = +3
Query: 132 LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 311
L G Q+YN +TAHA N LVP+++GAPD+AFPR+NNI F
Sbjct: 47 LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106
Query: 312 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 491
VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS
Sbjct: 107 PSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFIT 166
Query: 492 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGG 671
+ +LPLFV A+ +TA AGAIT+LLTDRN NTSF+DPAGGG
Sbjct: 167 TVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGG 226
Query: 672 DPILYQHLF*FFGHPEVYILILPGXGI 752
DPILYQHLF FFGHPEVYILI+PG G+
Sbjct: 227 DPILYQHLFWFFGHPEVYILIIPGFGM 253
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 202 bits (493), Expect = 7e-51
Identities = 105/207 (50%), Positives = 126/207 (60%)
Frame = +3
Query: 132 LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 311
L+G QIYN +TAHA N LVP+++G+PD+AFPR+NNI F
Sbjct: 55 LLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLP 114
Query: 312 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 491
+VE G GTG TVYPPLSS +H G +VDLAIFSLH++G SS
Sbjct: 115 PSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFIS 174
Query: 492 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGG 671
S ++PLFV ++ +TAF AGAIT+LLTDRN NTSFFD +GGG
Sbjct: 175 TILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGG 234
Query: 672 DPILYQHLF*FFGHPEVYILILPGXGI 752
DPILYQHLF FFGHPEVYILILPG G+
Sbjct: 235 DPILYQHLFWFFGHPEVYILILPGFGM 261
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 192 bits (467), Expect = 1e-47
Identities = 103/198 (52%), Positives = 114/198 (57%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R G PGS IG Q+YN VTAHA N LVPL+LGAPD+AFPR+
Sbjct: 21 RVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRL 80
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 81 NNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSS 140
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ + LFV +V ITA AGAIT+LLTDRN NT
Sbjct: 141 ILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNT 200
Query: 645 SFFDPAGGGDPILYQHLF 698
SFFDPAGGGDPILYQHLF
Sbjct: 201 SFFDPAGGGDPILYQHLF 218
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 191 bits (466), Expect = 1e-47
Identities = 104/212 (49%), Positives = 123/212 (58%), Gaps = 2/212 (0%)
Frame = +3
Query: 123 PGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
PGS L G +Q++N V HA N L+PL++GA D AFPRINNI
Sbjct: 43 PGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIA 102
Query: 297 FXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXX 476
F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 103 FWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGA 162
Query: 477 XXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFD 656
+ +LPLFV ++ ITAF + IT+LL DRN NTSFF+
Sbjct: 163 INFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFE 222
Query: 657 PAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+GGGDPILY+HLF FFGHPEVYILI+PG GI
Sbjct: 223 VSGGGDPILYEHLFWFFGHPEVYILIIPGFGI 254
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 190 bits (462), Expect = 4e-47
Identities = 103/212 (48%), Positives = 122/212 (57%), Gaps = 2/212 (0%)
Frame = +3
Query: 123 PGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
PGS L G +Q++N V HA N ++PL++GA D++FPRIN+I
Sbjct: 43 PGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFPRINSIG 102
Query: 297 FXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXX 476
F +VE+GAGTG TVYPPLSS AH G SVDLAIFSLHL ISS
Sbjct: 103 FWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGA 162
Query: 477 XXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFD 656
S ++PLFV A+ ITAF + IT+LL DRN NTSFF+
Sbjct: 163 INFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITMLLMDRNFNTSFFE 222
Query: 657 PAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
AGGGDPI YQH F FFGHPEVYILI+PG GI
Sbjct: 223 VAGGGDPIFYQHAFWFFGHPEVYILIIPGFGI 254
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 187 bits (456), Expect = 2e-46
Identities = 103/217 (47%), Positives = 118/217 (54%), Gaps = 1/217 (0%)
Frame = +3
Query: 105 RAXXGNPG-SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R PG I Q+YN +TAHA N L+PL LG PD+ FPR
Sbjct: 38 RLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGFPR 97
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
+NNI + +ENG GTG T+YPPLS +H G SVDLAIF LHL+GIS
Sbjct: 98 LNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSGIS 157
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S +L LF AV ITA AG IT++LTDRN N
Sbjct: 158 SLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVLTDRNFN 217
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
TSFF+ AGGGDPILYQHLF FFGHPEVYILI+PG GI
Sbjct: 218 TSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGI 254
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 186 bits (454), Expect = 4e-46
Identities = 99/202 (49%), Positives = 117/202 (57%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +PGS++G +YN VTAHA N VPL++GAPD+AFPR+
Sbjct: 39 RLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRL 98
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NNI F +VE GAGTG TVYPPL+S AH G SVD+AIFSLHLAG+SS
Sbjct: 99 NNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSS 158
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ ++PLFV +V ITA AGAIT+LLTDR NT
Sbjct: 159 ILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLTDRYFNT 218
Query: 645 SFFDPAGGGDPILYQHLF*FFG 710
+FFDPAGGGDPILYQHLF FFG
Sbjct: 219 TFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 180 bits (439), Expect = 3e-44
Identities = 97/217 (44%), Positives = 117/217 (53%), Gaps = 1/217 (0%)
Frame = +3
Query: 105 RAXXGNPG-SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R PG I Q+YN +T+H N L+P+++G PD+AFPR
Sbjct: 64 RLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPR 123
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
+NN+ + I+ENG GTG T+YPPLS +H VDL IF LHL+GIS
Sbjct: 124 LNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSGIS 183
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S +L LF AV ITA A AIT+LLTDRNLN
Sbjct: 184 SLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLLTDRNLN 243
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
TSF++ AGGGD ILYQHLF FFGHPEVYILI+PG GI
Sbjct: 244 TSFYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGI 280
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 180 bits (437), Expect = 4e-44
Identities = 94/207 (45%), Positives = 108/207 (52%)
Frame = +3
Query: 132 LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 311
L G YN T H N VP+++GAPD++FPR+NN F
Sbjct: 51 LFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLP 110
Query: 312 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 491
E G GTG TVYPPLSS +H G SVDL IFS HL GI S
Sbjct: 111 GAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFIC 170
Query: 492 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGG 671
LPLFV +V +T+F A AIT+LL DRN NTSF+DP GGG
Sbjct: 171 TIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVGGG 230
Query: 672 DPILYQHLF*FFGHPEVYILILPGXGI 752
D +LYQHLF FFGHPEVYILILPG G+
Sbjct: 231 DVVLYQHLFWFFGHPEVYILILPGFGL 257
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 176 bits (428), Expect = 6e-43
Identities = 94/189 (49%), Positives = 109/189 (57%)
Frame = +3
Query: 132 LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 311
L G Q+YN +TAHA N LVP+++GAPD+AFPR+NNI F
Sbjct: 47 LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106
Query: 312 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 491
VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS
Sbjct: 107 PSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFIT 166
Query: 492 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGG 671
+ +LPLFV A+ +TA AGAIT+LLTDRN NTSF+DPAGGG
Sbjct: 167 TVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGG 226
Query: 672 DPILYQHLF 698
DPILYQHLF
Sbjct: 227 DPILYQHLF 235
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 175 bits (425), Expect = 1e-42
Identities = 89/211 (42%), Positives = 119/211 (56%)
Frame = +3
Query: 120 NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ Q++N +TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+GGGDP+LY+H+F FFGHPEVYILI+P G+
Sbjct: 241 SGGGDPLLYEHIFWFFGHPEVYILIVPVFGV 271
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 175 bits (425), Expect = 1e-42
Identities = 89/211 (42%), Positives = 119/211 (56%)
Frame = +3
Query: 120 NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ Q++N +TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+GGGDP+LY+H+F FFGHPEVYILI+P G+
Sbjct: 241 SGGGDPLLYEHIFWFFGHPEVYILIVPVFGV 271
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 171 bits (415), Expect = 2e-41
Identities = 96/220 (43%), Positives = 119/220 (54%), Gaps = 4/220 (1%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R G +L A ++N +TAH N VP+++GAPD+AFPR+
Sbjct: 78 RFSDGPSATLDQAYHLWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRM 137
Query: 285 NNIRFXXXXXXXXXXXXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 452
NNI F V NGAGTG TVY PLS++ G +VD+AI SLH+A
Sbjct: 138 NNISFWLLIPAFALLLGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIA 196
Query: 453 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 632
G SS + ++PLFV +V +TAF A AIT+LLTDR
Sbjct: 197 GASSILGAINFITTILNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDR 256
Query: 633 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
N T+F+D AGGGDP LYQHLF FFGHPEVYI+ILPG GI
Sbjct: 257 NFGTTFYDAAGGGDPELYQHLFWFFGHPEVYIMILPGFGI 296
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 169 bits (410), Expect = 8e-41
Identities = 81/201 (40%), Positives = 113/201 (56%)
Frame = +3
Query: 150 IYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
++N +T H N +PL++GAPD+AFPR+NN+ +
Sbjct: 159 LWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPRLNNLSYWMYVAGTCLA 218
Query: 330 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 509
+++ GAG G T YPP+S+ R+VD AIF++H++G SS
Sbjct: 219 FCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGASSILGSINFITTFLNMR 278
Query: 510 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQ 689
+ ++PLF +V +TA+ AGAIT+LLTDRN T+FFDPAGGGDPIL+Q
Sbjct: 279 APGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFGTTFFDPAGGGDPILFQ 338
Query: 690 HLF*FFGHPEVYILILPGXGI 752
H+F FFGHPEVYI+ILP G+
Sbjct: 339 HIFWFFGHPEVYIVILPAFGV 359
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 167 bits (405), Expect = 3e-40
Identities = 94/207 (45%), Positives = 114/207 (55%), Gaps = 2/207 (0%)
Frame = +3
Query: 123 PGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
PGS L G +Q++N V HA N L+PL++GA D AFPRINNI
Sbjct: 43 PGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIA 102
Query: 297 FXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXX 476
F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 103 FWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGA 162
Query: 477 XXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFD 656
+ +LPLFV ++ ITAF + IT+LL DRN NTSFF+
Sbjct: 163 INFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFE 222
Query: 657 PAGGGDPILYQHLF*FFGHPEVYILIL 737
+GGGDPILY+HLF FFG I++L
Sbjct: 223 VSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 166 bits (403), Expect = 6e-40
Identities = 95/221 (42%), Positives = 115/221 (52%), Gaps = 5/221 (2%)
Frame = +3
Query: 105 RAXXGNPG-SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R PG I Q+YN +TAHA N L+PL++G PD+AFPR
Sbjct: 66 RLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAFPR 125
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIFSLHL 449
+NNI F I+E G GTG T+ YPPLS +H G SVDLAIF+LHL
Sbjct: 126 LNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFALHL 185
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 629
+G+SS +L LF + IT++LTD
Sbjct: 186 SGVSSLLGSINFITTVANMRTPGIKLHKLALF-------GWATWSSRSRYFLGITMVLTD 238
Query: 630 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
RN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PG GI
Sbjct: 239 RNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGI 279
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 161 bits (390), Expect = 2e-38
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 425
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 426 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 606 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 713
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 157 bits (381), Expect = 3e-37
Identities = 86/193 (44%), Positives = 105/193 (54%)
Frame = +3
Query: 132 LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 311
L G Q++N V HA N ++PL++GA D AFPRINNI F
Sbjct: 48 LHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLP 107
Query: 312 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 491
+VE+GAGTG TVYPPL+S AH G SVDLAIF+LH+ ISS
Sbjct: 108 MGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIV 167
Query: 492 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGG 671
+ +LPLFV A+ ITA + +T+LL DRN NTSFF+ AGGG
Sbjct: 168 TTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTMLLLDRNFNTSFFEVAGGG 227
Query: 672 DPILYQHLF*FFG 710
DPILY+HLF FFG
Sbjct: 228 DPILYEHLFWFFG 240
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 156 bits (379), Expect = 5e-37
Identities = 88/185 (47%), Positives = 101/185 (54%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA PG+L+G QIYN VTAHA N L+PL++GAPD+AFPR+
Sbjct: 27 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRM 86
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F +E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAGISS
Sbjct: 87 NNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISS 146
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S Q PLFV AV ITA A IT+LLTDRNLNT
Sbjct: 147 ILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNT 206
Query: 645 SFFDP 659
+FFDP
Sbjct: 207 TFFDP 211
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 154 bits (374), Expect = 2e-36
Identities = 82/208 (39%), Positives = 113/208 (54%), Gaps = 2/208 (0%)
Frame = +3
Query: 120 NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ Q++N +TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPILYQHLF*FFGH--PEVYILIL 737
+GGGDP+LY+H+F FFG P + I+I+
Sbjct: 241 SGGGDPLLYEHIFWFFGQIWPIIIIIII 268
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 152 bits (369), Expect = 8e-36
Identities = 87/210 (41%), Positives = 110/210 (52%)
Frame = +3
Query: 108 AXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 287
A G+P L G Q +N +TAHA N L+PL+LGA D+AF R+N
Sbjct: 46 ANTGSP-FLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLN 104
Query: 288 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 467
NI F +VE GAGTG TVY PL+ +H G +VDLAIFSLHL+G SS
Sbjct: 105 NISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSSL 164
Query: 468 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 647
++ +PLF AV TA A +T+ + DRN NTS
Sbjct: 165 LGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNFNTS 224
Query: 648 FFDPAGGGDPILYQHLF*FFGHPEVYILIL 737
FF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 225 FFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 148 bits (358), Expect = 2e-34
Identities = 83/211 (39%), Positives = 113/211 (53%)
Frame = +3
Query: 120 NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ Q++N +TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+GGGDP+LY+H+ F+ +P V ILI GI
Sbjct: 241 SGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 144 bits (349), Expect = 2e-33
Identities = 77/209 (36%), Positives = 101/209 (48%)
Frame = +3
Query: 126 GSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 305
G L G Q YN +T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 306 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 485
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 486 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG 665
SF LF+ A ITA AG +T++L DRN NTSF+D G
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVG 227
Query: 666 GGDPILYQHLF*FFGHPEVYILILPGXGI 752
GGD IL+QH+F FFGHPEVYI++LP G+
Sbjct: 228 GGDLILFQHIFWFFGHPEVYIILLPVFGL 256
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 143 bits (347), Expect = 4e-33
Identities = 78/218 (35%), Positives = 104/218 (47%), Gaps = 2/218 (0%)
Frame = +3
Query: 105 RAXXGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R +PG G+ Q+YN +T H N ++PL+LGAP++AFP
Sbjct: 47 RFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAFP 106
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+N + F + G G+ T YPPLS S+D I LH GI
Sbjct: 107 RVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGLHTVGI 165
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
S + DQ+ +FV +T+F AG++ LL DRN
Sbjct: 166 GSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLLLDRNF 225
Query: 639 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
NTSF+D GG+P+LYQHLF FFGHPEVY++ILP GI
Sbjct: 226 NTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGI 263
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 140 bits (338), Expect = 4e-32
Identities = 75/217 (34%), Positives = 106/217 (48%), Gaps = 1/217 (0%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +PG + +Y+ +T HA N +PL++ D++ PR+
Sbjct: 40 RIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRL 99
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ + G G G T+YPPLS++ G +DLA+FSLH+AG+SS
Sbjct: 100 NNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSS 159
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
F L P+ + + T+ A +T+LL DR+ +
Sbjct: 160 IAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHFS 219
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
TSF+ P GGGDPIL+QHLF FFGHPEVYILILP G+
Sbjct: 220 TSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGV 256
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 125 bits (302), Expect = 1e-27
Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 1/202 (0%)
Frame = +3
Query: 150 IYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
+YN T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 330 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 506
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 507 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 686
+ L + ++ IT+ G + +LL+D + NT FFDP GDPILY
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILY 237
Query: 687 QHLF*FFGHPEVYILILPGXGI 752
QHLF FFGHPEVYILILP G+
Sbjct: 238 QHLFWFFGHPEVYILILPAFGV 259
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 125 bits (301), Expect = 1e-27
Identities = 67/202 (33%), Positives = 96/202 (47%)
Frame = +3
Query: 147 QIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+IYN T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 327 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 506
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177
Query: 507 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 686
D++ ++ +T+F ++ DR+ NT FF+ + GDP+LY
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLY 237
Query: 687 QHLF*FFGHPEVYILILPGXGI 752
QHLF FFGHPEVYI+ILPG GI
Sbjct: 238 QHLFWFFGHPEVYIMILPGFGI 259
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 120 bits (290), Expect = 3e-26
Identities = 75/204 (36%), Positives = 94/204 (46%)
Frame = +3
Query: 141 AAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 320
+ +YN VT H N +P+ L D+ PR+N++
Sbjct: 148 SVDVYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSI 207
Query: 321 XXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXX 500
G G G T+YPPLS G VD +FSLHLAG+SS
Sbjct: 208 FYMELSLYY--GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFISTIF 264
Query: 501 XXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPI 680
S + V A T+ A IT+LL DRN T+FF+P+GGGDPI
Sbjct: 265 SRLSFNCS-----IIVWAYLFTSVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDPI 319
Query: 681 LYQHLF*FFGHPEVYILILPGXGI 752
L+QHLF FFGHPEVY+LILPG GI
Sbjct: 320 LFQHLFWFFGHPEVYVLILPGFGI 343
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 116 bits (280), Expect = 5e-25
Identities = 70/203 (34%), Positives = 97/203 (47%)
Frame = +3
Query: 144 AQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 323
+ +YN VT H N L+P PD+ FPR+N + F
Sbjct: 46 SDVYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLS 105
Query: 324 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 503
++ + A G T YPPLSS SV+ ++FSLHLAGI+S
Sbjct: 106 L-----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLA 156
Query: 504 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 683
+ L LF ++ + + A IT++LTD++L T F+D GGDP+L
Sbjct: 157 TRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKHLGTCFYDATMGGDPLL 214
Query: 684 YQHLF*FFGHPEVYILILPGXGI 752
YQHLF FFGHPEVY++ILP G+
Sbjct: 215 YQHLFWFFGHPEVYVVILPVFGL 237
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 115 bits (276), Expect = 1e-24
Identities = 74/222 (33%), Positives = 97/222 (43%), Gaps = 6/222 (2%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R G G +IG A Y T H N L+PL++GA D+AFPR+
Sbjct: 72 RLLFGESG-VIGPAT-YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRL 129
Query: 285 NNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
N F G AG G T Y PLS+N+ G L + ++ + G+S
Sbjct: 130 NMYSFWTFLLSQLLVLASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVS 189
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S ++ +LPL + + +TA A +LL DR+
Sbjct: 190 STMGAVNYITTVIRLRAPGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFG 249
Query: 642 TSFFDPA-----GGGDPILYQHLF*FFGHPEVYILILPGXGI 752
T FF GGGDPIL+QHLF FGHPEVYI+ILP GI
Sbjct: 250 TEFFVAGASAVRGGGDPILWQHLFWIFGHPEVYIMILPAWGI 291
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 114 bits (274), Expect = 3e-24
Identities = 66/158 (41%), Positives = 79/158 (50%)
Frame = +3
Query: 132 LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 311
L G Q+YN +TAHA N LVP+++GAPD+AFPR+NNI F
Sbjct: 47 LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106
Query: 312 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 491
VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS
Sbjct: 107 PSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFIT 166
Query: 492 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
+ +LPLFV A+ +TA AG
Sbjct: 167 TVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 110 bits (265), Expect = 3e-23
Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 2/203 (0%)
Frame = +3
Query: 150 IYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
IYN +T H N L+P+++G +++ PR+N I F
Sbjct: 63 IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIF 122
Query: 330 XXXXIV-ENGAGTG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 503
++ +G T+YPPLS+ A G ++DL++ +H+ GISS
Sbjct: 123 VISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKY 182
Query: 504 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 683
+F + ++ ++ +T+ AIT LL DRN+N++ +D G DP+L
Sbjct: 183 NRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVL 240
Query: 684 YQHLF*FFGHPEVYILILPGXGI 752
YQHLF FFGHPEVY++ILP G+
Sbjct: 241 YQHLFWFFGHPEVYVIILPVFGL 263
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 108 bits (260), Expect = 1e-22
Identities = 62/174 (35%), Positives = 82/174 (47%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N VPL++GA D+AFPR+N+ F + + G Y PLSS
Sbjct: 99 NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSS 158
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
+ VD I L + GI S S ++PLFV + + A
Sbjct: 159 LQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILAL 218
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A+ +LL DR L ++FFDP GG +L+QH F FGHPEVYILILPG G+
Sbjct: 219 PALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGM 272
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 108 bits (259), Expect = 2e-22
Identities = 65/209 (31%), Positives = 93/209 (44%)
Frame = +3
Query: 123 PGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 302
PG + + YN +T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 303 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 482
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 483 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 662
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 663 GGGDPILYQHLF*FFGHPEVYILILPGXG 749
GGDP++YQ++F F+ HP VY+ +LP G
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLPVFG 208
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 107 bits (258), Expect = 2e-22
Identities = 79/224 (35%), Positives = 102/224 (45%), Gaps = 8/224 (3%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +PG + + YN +T+H N L+PL++GA D+AFPRI
Sbjct: 120 RIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAFPRI 178
Query: 285 NNIRFXXX--XXXXXXXXXXXIVEN-GAGTG*TVYPPLS-----SNIAHRGRSVDLAIFS 440
N I F I E A TG T+Y PLS N A+ G VDL +
Sbjct: 179 NAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLMLLG 236
Query: 441 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 620
LHL+G+S+ S+ L +F + + AI +L
Sbjct: 237 LHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAIMML 296
Query: 621 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
L DRN TSFF AG G IL+QHLF FFGHPEVYI++LP GI
Sbjct: 297 LFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGI 338
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 105 bits (251), Expect = 2e-21
Identities = 67/211 (31%), Positives = 93/211 (44%), Gaps = 1/211 (0%)
Frame = +3
Query: 123 PGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 302
PG I A YN T H N ++PL+LGA D+AFPR+N +
Sbjct: 74 PGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSLY 133
Query: 303 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 482
++ G TG T Y P S AH +V +F + G SS
Sbjct: 134 IYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIGFSSIVTGIN 189
Query: 483 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL-NTSFFDP 659
++ ++PLFV A+ T+ G + +L+T NL FDP
Sbjct: 190 FIVTCHTMRAPGITWFKMPLFVWAIYATSCIQVLATPVI-GLLLVLVTVENLFGFGMFDP 248
Query: 660 AGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A GGDP+L+QHLF F+ HP VYI++LP G+
Sbjct: 249 ARGGDPVLFQHLFWFYSHPAVYIMVLPSFGV 279
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 104 bits (249), Expect = 3e-21
Identities = 59/172 (34%), Positives = 82/172 (47%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL++G IAFPR+N + V+ G G Y PLS G+
Sbjct: 98 LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGK 157
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
D+ + +S+ S D++PLFV ++ +T+F
Sbjct: 158 RADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPA 217
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A T L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G+
Sbjct: 218 IMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGM 269
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 103 bits (248), Expect = 4e-21
Identities = 67/202 (33%), Positives = 88/202 (43%)
Frame = +3
Query: 147 QIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
++YN +T H N L+PL++G D+AFPR+N + F
Sbjct: 67 EMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGIL 125
Query: 327 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 506
V G T YPPLS G +L I SL L G SS
Sbjct: 126 LISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTTILKM 182
Query: 507 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 686
+PLF A+ T+ A A+ +L D TSFF+P GGGDP++Y
Sbjct: 183 RIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVY 242
Query: 687 QHLF*FFGHPEVYILILPGXGI 752
QHLF F+ HP VYI+ILP G+
Sbjct: 243 QHLFWFYSHPAVYIMILPFFGV 264
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 102 bits (245), Expect = 8e-21
Identities = 68/216 (31%), Positives = 88/216 (40%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R G P + +YN T H N +VPL++GA D+AFPR+
Sbjct: 57 RIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMIGARDMAFPRL 115
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N + V G Y PL+ VD I + L G++S
Sbjct: 116 NALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWIVGIGLTGVAS 175
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ +++PLFV + AF A LL DR+ T
Sbjct: 176 IAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRHFGT 235
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
FF P GGD +L+QHLF FFGHPEVYILILP GI
Sbjct: 236 RFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGI 271
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 101 bits (243), Expect = 1e-20
Identities = 65/203 (32%), Positives = 92/203 (45%), Gaps = 2/203 (0%)
Frame = +3
Query: 150 IYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
+YN +T+H N +PL++ A D+AFPRIN I F
Sbjct: 109 LYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILI 167
Query: 330 XXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 503
++ A T T+Y PLS ++ +VD+ + LHL G+S+
Sbjct: 168 WSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFT 225
Query: 504 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 683
+ L +F + + A+ +LL DRN T+FF AGG DPI
Sbjct: 226 ERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLDRNFGTTFFTVAGG-DPIF 284
Query: 684 YQHLF*FFGHPEVYILILPGXGI 752
+QHLF FFGHPEVY+L+LP GI
Sbjct: 285 WQHLFWFFGHPEVYVLVLPPMGI 307
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 101 bits (241), Expect = 3e-20
Identities = 59/177 (33%), Positives = 82/177 (46%), Gaps = 3/177 (1%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNI 401
N L+P ++GAPD+AFP++N F G A +G YPP+S + +
Sbjct: 103 NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPL 162
Query: 402 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 581
H L I ++ L+GISS F ++P+FV
Sbjct: 163 GHFINGEFLWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQL 222
Query: 582 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
G +LL D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP GI
Sbjct: 223 IGLPALTGGAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGI 279
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 100 bits (240), Expect = 3e-20
Identities = 61/210 (29%), Positives = 89/210 (42%)
Frame = +3
Query: 123 PGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 302
PG I A YN T H N L+P+++GA D+AFP++N + F
Sbjct: 67 PGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSFY 126
Query: 303 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 482
+V+ GA TG T Y P S+ + V L F L G SS
Sbjct: 127 VYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---GFSSILTGLN 182
Query: 483 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 662
+ +LPLFV ++ T+ ++ ++ + FDPA
Sbjct: 183 FIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGWGIFDPA 242
Query: 663 GGGDPILYQHLF*FFGHPEVYILILPGXGI 752
GGDP+L+QH F F+ HP VYI++LP +
Sbjct: 243 RGGDPVLFQHFFWFYSHPAVYIMVLPAMAV 272
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 98.7 bits (235), Expect = 1e-19
Identities = 61/180 (33%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 407
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 588 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGL 263
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 97.9 bits (233), Expect = 2e-19
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAH 407
N +VPL +GA D+AFPR+N + + E+GA G T+Y PL++ I
Sbjct: 88 NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYT 147
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
G +DLA ++ L +S + ++P+F ++ T
Sbjct: 148 PGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWA 207
Query: 588 XXXXAGAITILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGXG 749
+LL DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P G
Sbjct: 208 FPPLMVGGALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALG 260
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 96.3 bits (229), Expect = 7e-19
Identities = 58/175 (33%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAH 407
N ++PL +GAPD+AFPR+N F + GA G T+Y PLS I
Sbjct: 105 NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHS 164
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
G D+ I + GI S + ++P+F + + +
Sbjct: 165 PGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLI 224
Query: 588 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A +L DR L +DPA GG +L+QHLF FFGHPEVY+L LP GI
Sbjct: 225 FPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGI 278
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 95.5 bits (227), Expect = 1e-18
Identities = 66/219 (30%), Positives = 94/219 (42%), Gaps = 15/219 (6%)
Frame = +3
Query: 141 AAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 320
A + Y VT HA N L+PL++GA D+AFP +N + +
Sbjct: 84 APEFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAF 143
Query: 321 XXXXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 488
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 144 FFFGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYM 203
Query: 489 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP--- 659
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 204 TTIIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGL 263
Query: 660 --------AGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
AGGG P+L+QHLF F+ HP VYI+ILP G+
Sbjct: 264 VVNNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGM 302
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 94.7 bits (225), Expect = 2e-18
Identities = 57/216 (26%), Positives = 91/216 (42%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R P + +AQ YN +T H N +VPL +GA D++FP +
Sbjct: 50 RIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSFPFL 108
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N + F + G T Y LS + +G +D + L ++G+ +
Sbjct: 109 NALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFVLGLQISGLGT 166
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
++ +LPLF + + + +++ DR T
Sbjct: 167 LIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRLFGT 226
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+FF+P GG+ ++++HLF FGHPEVYILILP GI
Sbjct: 227 NFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGI 262
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 94.3 bits (224), Expect = 3e-18
Identities = 58/211 (27%), Positives = 87/211 (41%), Gaps = 1/211 (0%)
Frame = +3
Query: 123 PGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 302
P + + YN +T H N +VPL+LGA D+A PR+N +
Sbjct: 56 PNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRVNAFSYW 115
Query: 303 XXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 479
GA G T Y P S A VD + ++ L G SS
Sbjct: 116 AFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLLGFSSLLGNA 172
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 659
S ++P++V +V + A ++L +R + S+F+P
Sbjct: 173 NFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIGLSWFNP 232
Query: 660 AGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A GGDP+L+Q F F+ HP VY+++LP GI
Sbjct: 233 AVGGDPVLFQQFFWFYSHPTVYVMLLPYLGI 263
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 91.1 bits (216), Expect = 3e-17
Identities = 52/172 (30%), Positives = 77/172 (44%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
S D + + LA I+S S ++P+ + + TAF
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPP 243
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+L +R L FFD GGDP+L+QHLF FGHPEVYI+ LP G+
Sbjct: 244 LIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGM 295
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 90.2 bits (214), Expect = 5e-17
Identities = 67/193 (34%), Positives = 79/193 (40%)
Frame = +3
Query: 126 GSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 305
G +IG QI VTA A L PL +GAP +A PR+ N+ F
Sbjct: 35 GQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWL 94
Query: 306 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 485
+ G G VYPP SS +AH +VDL IF LHLAGISS
Sbjct: 95 LPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNF 154
Query: 486 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG 665
++ LF A AIT+L R N SFF P
Sbjct: 155 LVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRXXNXSFFXPXX 214
Query: 666 GGDPILYQHLF*F 704
G P + F F
Sbjct: 215 XGXPXXFPTFFXF 227
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 90.2 bits (214), Expect = 5e-17
Identities = 53/174 (30%), Positives = 76/174 (43%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +NN+ F ++ G T Y PL+SN
Sbjct: 120 NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSP 179
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G + + L +AGI + + ++P+F IT
Sbjct: 180 GPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAF 239
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A+ +L DR FF GG P+L+ +LF +GHPEVYI+ILP GI
Sbjct: 240 PVLTVALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGI 293
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 88.2 bits (209), Expect = 2e-16
Identities = 73/232 (31%), Positives = 95/232 (40%), Gaps = 16/232 (6%)
Frame = +3
Query: 105 RAXXGNPG--SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R G PG S I A Q Y +T H N L+PL++GA D+ FP
Sbjct: 64 RLQLGFPGTFSFIDANQ-YLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFP 122
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIFSLHL 449
+N + + V G G G T+YPP + S + + L + SL L
Sbjct: 123 YVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLIL 182
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAITILLT 626
I + +LPL V + T G++ +LL
Sbjct: 183 FIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLLL- 241
Query: 627 DRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPGXGI 752
DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP GI
Sbjct: 242 DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAFGI 293
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 87.4 bits (207), Expect = 3e-16
Identities = 54/174 (31%), Positives = 77/174 (44%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP GI
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGI 298
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 87.0 bits (206), Expect = 4e-16
Identities = 65/216 (30%), Positives = 92/216 (42%), Gaps = 14/216 (6%)
Frame = +3
Query: 147 QIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+ Y VT H N L+PL +GA D+A +N + +
Sbjct: 100 EFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSSVI 159
Query: 327 XXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 494
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 160 MFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYITT 219
Query: 495 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----A 662
SF +LPL + A ITA A +L+ DR+L TSFF A
Sbjct: 220 VINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIYIA 279
Query: 663 G------GGDPILYQHLF*FFGHPEVYILILPGXGI 752
G GG P+L+QHLF F GHPEVYI+++P GI
Sbjct: 280 GEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGI 315
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 87.0 bits (206), Expect = 4e-16
Identities = 54/174 (31%), Positives = 76/174 (43%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N L PL+LG+ D+AFPR+ + + G Y PL+S
Sbjct: 116 NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSA 175
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G ++D+ + L GIS+ S D+LP+ V +
Sbjct: 176 GANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAV 235
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+ A +L DRN T FFD A GG P+L+QHLF F HP VY+++LP GI
Sbjct: 236 PSVSLAFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGI 289
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 86.6 bits (205), Expect = 6e-16
Identities = 52/172 (30%), Positives = 75/172 (43%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+D + IS+ S +++P+FV AV + +F
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPP 224
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A +L DR FF A GDPIL+QHLF FFGHPEVYI+ +P G+
Sbjct: 225 LVIASLMLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGM 275
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 86.2 bits (204), Expect = 8e-16
Identities = 58/215 (26%), Positives = 82/215 (38%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA P S + YN T H L+P +LG+ D+AFPR+
Sbjct: 55 RAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDLAFPRL 113
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
F + +G +YPPLSS + G + D + + IS+
Sbjct: 114 TAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITFVEISA 173
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S ++P+F +TA +L +R +
Sbjct: 174 IAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSILLELERAFDM 233
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXG 749
FF A GGD +L+QHLF FGHPEVYI+ LP G
Sbjct: 234 PFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAG 268
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 85.4 bits (202), Expect = 1e-15
Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 1/198 (0%)
Frame = +3
Query: 150 IYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
+YN + H N +PL++GA D+AFPR+N +
Sbjct: 56 VYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVA 115
Query: 330 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 509
+ + T YPP S I H + FS+ L G +S
Sbjct: 116 LTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMR 172
Query: 510 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILLTDRNLNTSFFDPAGGGDPILY 686
+++L +FV A + AF G A+T+L D+ + T FFD A GGD + Y
Sbjct: 173 APGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTY 231
Query: 687 QHLF*FFGHPEVYILILP 740
Q+LF F+ HP VY++ LP
Sbjct: 232 QNLFWFYSHPAVYVIFLP 249
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 85.4 bits (202), Expect = 1e-15
Identities = 53/174 (30%), Positives = 75/174 (43%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A+ +L DR L+ F GG+P++Y +LF +GHPEVYILILP G+
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGV 297
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 85.0 bits (201), Expect = 2e-15
Identities = 61/220 (27%), Positives = 86/220 (39%), Gaps = 4/220 (1%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R PG + A+ +N T HA N +PL++GA D+AFPR+
Sbjct: 55 RLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMIGARDVAFPRL 113
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 452
N + ++ G G Y L+S G D L L
Sbjct: 114 NAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGPDFWTLGLLLL 173
Query: 453 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 632
GI + + ++P+FV +T+ A+ +L+ DR
Sbjct: 174 GIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVTVALIMLMFDR 233
Query: 633 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+FF+ GG + YQHLF FGHPEVYILILP GI
Sbjct: 234 TFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGI 273
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 84.2 bits (199), Expect = 3e-15
Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 1/175 (0%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 407
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKV--PYLKMPLFVWGFFTTAILMIIA 196
Query: 588 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+ +R T FFD A GG P+L+Q LF FFGHPEVYILILP G+
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGL 251
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 83.4 bits (197), Expect = 5e-15
Identities = 56/215 (26%), Positives = 84/215 (39%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA +P S A+ Y T H L+P +LG+ D+A+PR+
Sbjct: 55 RAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDLAYPRL 113
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
+ F + +G +YPPL+S + G + D + + IS+
Sbjct: 114 SAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITFVEISA 173
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S D++P++ +TA +L +R
Sbjct: 174 IAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSILLELERAFGL 233
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXG 749
FF A GGD +L+QHLF FGHPEVYI+ LP G
Sbjct: 234 PFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAG 268
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 82.6 bits (195), Expect = 9e-15
Identities = 64/217 (29%), Positives = 91/217 (41%), Gaps = 1/217 (0%)
Frame = +3
Query: 105 RAXXGNPGS-LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
RA PG+ I + +N T H N VP+++ D+A+P+
Sbjct: 46 RAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMVRYKDMAYPK 104
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
+N I F + T PP S I+ G + D+ IF L + GIS
Sbjct: 105 LNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWIFGLKILGIS 158
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S Q+PL + ++ A A+ +LLTDR
Sbjct: 159 SILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALLMLLTDRLGV 218
Query: 642 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+ FF+PA GGDPI Y HLF F HPEVY+L++P G+
Sbjct: 219 SGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGM 255
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 425
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 426 LAIFS 440
LAI+S
Sbjct: 61 LAIYS 65
Score = 60.5 bits (140), Expect = 4e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +2
Query: 545 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 712
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 80.6 bits (190), Expect = 4e-14
Identities = 49/172 (28%), Positives = 72/172 (41%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+P +L A D+ FPR++ + G +YPPL+ G
Sbjct: 108 LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGD 167
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ D + + IS+ S ++P+F A+ I A
Sbjct: 168 NADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPA 227
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A +L +R+ FF GGDP+L+QHLF FFGHPEVYI+ LP G+
Sbjct: 228 VILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGL 279
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 80.2 bits (189), Expect = 5e-14
Identities = 45/96 (46%), Positives = 53/96 (55%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA G PG+L+G Q N VTAHA N LVPL++GAPD+AFPR+
Sbjct: 39 RAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRM 98
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 392
NN+ F VE GAGTG TVYPPL+
Sbjct: 99 NNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 80.2 bits (189), Expect = 5e-14
Identities = 49/172 (28%), Positives = 74/172 (43%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G+
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGM 338
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 80.2 bits (189), Expect = 5e-14
Identities = 53/174 (30%), Positives = 73/174 (41%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
L DR L+ FF GG+ + + ++F FGHPEVYILILP G+
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGV 317
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 78.2 bits (184), Expect = 2e-13
Identities = 64/228 (28%), Positives = 91/228 (39%), Gaps = 16/228 (7%)
Frame = +3
Query: 117 GNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
G PG ++ + Y +T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 297 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 461
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 642 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGXGI 752
TSFF P+G GG +L+QHLF FFGHPEVYI ILP GI
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGI 301
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 77.8 bits (183), Expect = 3e-13
Identities = 49/174 (28%), Positives = 75/174 (43%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+ + DR L+T F+ GG +LY +L +GHPEVYILILP GI
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGI 292
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 77.8 bits (183), Expect = 3e-13
Identities = 47/131 (35%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Frame = +3
Query: 366 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 536
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 537 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 716
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 717 EVYILILPGXG 749
EVY+LI+P G
Sbjct: 403 EVYVLIIPTFG 413
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 77.0 bits (181), Expect = 5e-13
Identities = 48/120 (40%), Positives = 57/120 (47%)
Frame = +3
Query: 105 RAXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R G PGSL+ Q+YN VTAH N LVPL+LGAPD+AFPR+
Sbjct: 22 RTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRM 81
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 82 NNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 76.2 bits (179), Expect = 8e-13
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 1/172 (0%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 413
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 414 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 593
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 594 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXG 749
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG G
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTG 281
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 74.9 bits (176), Expect = 2e-12
Identities = 45/168 (26%), Positives = 71/168 (42%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+P +LGA D+ FPR++ + + + +G +YPPL++ G
Sbjct: 126 LLPALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGL 183
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
D+ + L ++S + +PL+ V +
Sbjct: 184 GSDIWLLGLSFIEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPP 243
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 740
+ +R + FFDP GGDP+L+QHLF FGHPEVYI+ LP
Sbjct: 244 LIAGDLLFEMERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 74.5 bits (175), Expect = 3e-12
Identities = 55/216 (25%), Positives = 82/216 (37%), Gaps = 14/216 (6%)
Frame = +3
Query: 147 QIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+ Y T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 327 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 497
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 498 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 665
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 666 -------GGDPILYQHLF*FFGHPEVYILILPGXGI 752
GG P+L+QHLF F+ HP VYI++LP G+
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLPIMGM 305
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +3
Query: 633 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPG G+
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGM 230
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 73.3 bits (172), Expect = 6e-12
Identities = 50/200 (25%), Positives = 73/200 (36%)
Frame = +3
Query: 153 YNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 332
YN +T HA N +PL LG D+A PR+N
Sbjct: 74 YNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVV 133
Query: 333 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 512
G T Y PL+ + G SV + L+ G+ S
Sbjct: 134 LGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAVILN--GLGSLLGSANFAATIVNLRA 191
Query: 513 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 692
++P+F ++ T+ A + + L S F+P GG P+LYQ
Sbjct: 192 PGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQ 251
Query: 693 LF*FFGHPEVYILILPGXGI 752
F F+ HP VY+++LP GI
Sbjct: 252 FFWFYSHPAVYVMLLPYLGI 271
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +3
Query: 384 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 563
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 564 TAFXXXXXXXXXAGAITILLTDR 632
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 218 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 343
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 68.1 bits (159), Expect = 2e-10
Identities = 45/173 (26%), Positives = 71/173 (41%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXG 749
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP G
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFG 315
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 67.7 bits (158), Expect = 3e-10
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 13/187 (6%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--IA 404
N LVPL +GA D+AFPR+N + + G T+Y PL++ I
Sbjct: 89 NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIP 148
Query: 405 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 584
G + +L + + +P+F ++ +T +
Sbjct: 149 GEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLF 208
Query: 585 XXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYIL 731
A+ IL +D L T++F D G +L+ HLF FFGHPEVYI+
Sbjct: 209 AFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIV 268
Query: 732 ILPGXGI 752
P G+
Sbjct: 269 FFPALGV 275
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 64.1 bits (149), Expect = 4e-09
Identities = 37/90 (41%), Positives = 44/90 (48%)
Frame = +3
Query: 132 LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 311
L G Q+YN +TAHA N LVP+++GAPD+AFPR+NNI F
Sbjct: 47 LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106
Query: 312 XXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
VE GAGTG TV LS I
Sbjct: 107 PSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 342 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 58.8 bits (136), Expect = 1e-07
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +3
Query: 105 RAXXGNPGSLI--GAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R PG+ I G Q+YN +TAHA N VP+++G+PD+AFP
Sbjct: 40 RMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFP 99
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
R+NNI F +VE G G+G TV
Sbjct: 100 RLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/41 (68%), Positives = 29/41 (70%)
Frame = +2
Query: 632 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIXYN 754
K KYIIF S W F+STFILIFWT SLYFNFT I YN
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYN 47
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +3
Query: 528 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 707
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 708 GHPEVYILIL 737
GH +V LIL
Sbjct: 72 GHTDVLFLIL 81
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 58.0 bits (134), Expect = 2e-07
Identities = 37/98 (37%), Positives = 46/98 (46%)
Frame = +3
Query: 108 AXXGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 287
A G+P L G Q +N +TAHA N L+PL+LGA D+AF R+N
Sbjct: 46 ANTGSP-FLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLN 104
Query: 288 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
NI F +VE GAGTG TV SS +
Sbjct: 105 NISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 51.2 bits (117), Expect = 3e-05
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 123 PGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
PG+ L G Q++N V HA N L+PL++GA D++F R+NNI
Sbjct: 43 PGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFARLNNIS 102
Query: 297 FXXXXXXXXXXXXXXIVENGAGTG*TV 377
F +VE+GAGTG TV
Sbjct: 103 FWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 548 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 700
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 47.2 bits (107), Expect = 4e-04
Identities = 37/140 (26%), Positives = 44/140 (31%)
Frame = +2
Query: 224 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 403
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 404 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 583
T R +F T CM +YS
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181
Query: 584 XTTCFSWSYYNIINRSKLKY 643
+ S+YNI K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 46.0 bits (104), Expect = 0.001
Identities = 39/172 (22%), Positives = 62/172 (36%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+ L+D + F+ G P+ Y F F HPEVY+ ILP I
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAI 346
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 40.3 bits (90), Expect = 0.050
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 591 XXXAGAITILLTDRNLNT 644
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 37.9 bits (84), Expect = 0.27
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 702 FFGHPEVYILILPGXGI 752
FFGHPEVYILILPG G+
Sbjct: 2 FFGHPEVYILILPGFGM 18
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 702 FFGHPEVYILILPGXGI 752
FFGHPEVY+LILP GI
Sbjct: 1 FFGHPEVYVLILPVFGI 17
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 33.9 bits (74), Expect = 4.3
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +2
Query: 560 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 739
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 740 RI 745
I
Sbjct: 154 SI 155
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 32.7 bits (71), Expect = 10.0
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 666 GGDPILYQHLF*FFGHPEVYILILP 740
G DP+L + LF F GHP VY +LP
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLP 248
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 10.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 631 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 509
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
n=1; Candida albicans|Rep: Putative uncharacterized
protein CLN3 - Candida albicans (Yeast)
Length = 785
Score = 32.7 bits (71), Expect = 10.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 685 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 548
Y++ +PP + +KN K S NN IA T ++NNN N+ +P H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,030,110
Number of Sequences: 1657284
Number of extensions: 8764675
Number of successful extensions: 18392
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 16835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18138
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -