Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C08
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   10.0 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   10.0 

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 286 GTYDILISN*KEVPLLVAKFDAGFRHFLHRGRHV 185
           G +D+ + + + V  L     A F    HRG H+
Sbjct: 183 GAFDVTLESGERVTFLDTPGHAAFISMRHRGAHI 216


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +2

Query: 320 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 499
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 500 YRY 508
           + Y
Sbjct: 500 FDY 502


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 560 SILVCFNVWFLLWPL 516
           S LVC+ +W    PL
Sbjct: 215 SYLVCYGIWVYFVPL 229


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 560 SILVCFNVWFLLWPL 516
           S LVC+ +W    PL
Sbjct: 91  SYLVCYGIWVYFVPL 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,055
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)