Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C06
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   4.1  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    24   7.2  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    24   7.2  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    24   9.5  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +3

Query: 51  PNSLSHPAGVEKGL----PSPALCPAGTMNPWRLFINLFRMKLKNSCYAR 188
           P+S   P G  +G     P P LC  G   P    +  F +  K S +AR
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHAR 324


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 290 CRHLWIHFIDYE 255
           CRH WI F+ +E
Sbjct: 462 CRHFWISFLRFE 473


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 89  AAIAGTVSCRNDESLASIYKLIQNEAEK 172
           A + G + C+N E ++ +Y+L   E  K
Sbjct: 334 AFLYGPLDCKNPEDISLLYQLATGEDSK 361


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 172 TPAMPEALSRHHRNGNTDKMPFN 240
           TP+   A++  H++G  D MP N
Sbjct: 12  TPSAITAMAFSHKSGQNDSMPNN 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,560
Number of Sequences: 5004
Number of extensions: 25017
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)