Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C06
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    27   5.3  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   7.0  
07_01_0088 + 684471-685154,685271-685834,685938-686222                 26   9.2  

>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 120 TMNPWRLFINLFRMKLKNSCYARSLKPTPPKRKHRQN 230
           TM  W++FI  F +   + C+ + +K +     H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +3

Query: 93  PSPALCPAGTMNPWRLFINLFRMKLKNSCY----ARSLKPTPPKR 215
           P+ A+  A    P+RLF    R   K S      AR LKP+PP R
Sbjct: 3   PAVAVVAAAAAFPFRLFSAEARRNTKGSRSKRGSARPLKPSPPPR 47


>07_01_0088 + 684471-685154,685271-685834,685938-686222
          Length = 510

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 83  KRAAIAGTVSCRNDESLASIYKLIQNEAEKLLLCQK 190
           KR  I  T+S R+D+ + +    + ++++ + LC K
Sbjct: 435 KREMIVSTISRRDDDDMETFRDRVDDDSDHVRLCLK 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,754,877
Number of Sequences: 37544
Number of extensions: 176919
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)