Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C05
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0119 + 11485753-11486202                                         30   0.78 
01_05_0746 + 24856362-24856710,24856799-24856986                       29   1.8  
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701...    29   2.4  
02_03_0050 + 14433013-14433303                                         27   7.3  
07_03_1031 - 23389263-23389541                                         27   9.6  
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887...    27   9.6  
02_01_0341 + 2444419-2445495                                           27   9.6  

>04_03_0119 + 11485753-11486202
          Length = 149

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 29  GDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPL 151
           G ++ WCSS   P P  A S    L     C RR    SPL
Sbjct: 69  GGMYPWCSSPASPPPSSATSTCTALSPGTSCCRRCRRVSPL 109


>01_05_0746 + 24856362-24856710,24856799-24856986
          Length = 178

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 80  ARSDTVPLRFAWVCIRRPPSW 142
           ARSDT P   A VC+RR P+W
Sbjct: 84  ARSDTWPC-LAGVCVRRKPAW 103


>02_02_0123 +
           7015905-7015928,7015975-7016105,7017675-7017940,
           7018239-7018327,7018716-7018811,7018874-7018969,
           7019121-7019251,7020123-7020177,7020645-7020800,
           7021238-7021306,7021392-7021499,7022128-7022196,
           7022743-7022797,7023031-7023227
          Length = 513

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 69  CHFVPGR--IQSHCVSRGSASVGRHLGRRWGVVAASYKM 179
           C ++P R  ++S   SRG A+   HL RR   + A ++M
Sbjct: 106 CRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRM 144


>02_03_0050 + 14433013-14433303
          Length = 96

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 SPLGRGCCQLQNGFVERYHVPIYLVLSNCKF 235
           S LGR   Q Q G V R H P+Y+  S C++
Sbjct: 19  SSLGRR--QQQQGAVPRGHFPVYVGESRCRY 47


>07_03_1031 - 23389263-23389541
          Length = 92

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 192 RSTNPFCSWQQPRPSGDQDGG 130
           R+  P+CSWQ    S D  GG
Sbjct: 3   RTCLPWCSWQLAAASADNSGG 23


>03_02_0652 -
           10188076-10188243,10188353-10188541,10188633-10188750,
           10188841-10189491,10189870-10190033,10190137-10190574
          Length = 575

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 105 VSRGSASVGRHLGRRWGVVAAS 170
           VS G AS+GRHL RR   V  S
Sbjct: 9   VSAGEASLGRHLARRLVQVGVS 30


>02_01_0341 + 2444419-2445495
          Length = 358

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 44  WCSSGTKPVPFCARSDTVPLRFAW 115
           W  +G   +PFC R++ VP    W
Sbjct: 216 WSKAGDWALPFCGRAEYVPEHGLW 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,368
Number of Sequences: 37544
Number of extensions: 198690
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)