Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C05
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z70212-1|CAA94162.1|  406|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF067940-6|AAC19205.1|  223|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    27   8.7  

>Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical
           protein K02B7.1 protein.
          Length = 742

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 134 PSWSPLGRGCCQLQNGFVERYHVPIYLVLSNC 229
           P +SP G G C  QN ++   H+  +L    C
Sbjct: 429 PHYSPKGNGICSRQNRWIFHQHLRFHLDFVRC 460


>Z70212-1|CAA94162.1|  406|Caenorhabditis elegans Hypothetical
           protein R04D3.2 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 132 GRRMQTHAKRNGTVSDLAQNGTGLVPEL 49
           G+R++ HA+  GTV    QN TG+V  L
Sbjct: 90  GQRLRAHAELGGTVLVTEQNLTGVVESL 117


>Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical
           protein ZK455.3 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 52  LRN*TSAILCQVGYSPIAFRVGLHPSAAILVAAGAWLLPATKWVCRTVS 198
           +RN T+ ++  +  S + F +   P  A+  AA  W+ P  +W C  ++
Sbjct: 73  MRNSTNTLIIGLAISDLMFLLLCVPFTAVDYAAPTWIFP--EWTCSMIN 119


>U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical
           protein T03G11.4 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 147 GDQDG-GRRMQTHAKRNG-TVSDLAQNGTGLVPELHHTNTSPQKHD 16
           G Q G  R+    A++ G T  ++  N TGL PE+ H N  P K D
Sbjct: 426 GSQHGFPRKHLDMAEKIGETCHNMYDNPTGLGPEIAHFNMIPGKED 471


>AF067940-6|AAC19205.1|  223|Caenorhabditis elegans Hypothetical
           protein F36F12.6 protein.
          Length = 223

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 174 CSWQQPRPSGDQ 139
           C+WQ PRPS D+
Sbjct: 199 CTWQDPRPSSDK 210


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 170 LQNGFVERYHVPIYLVLSNCKFCFNLSII 256
           L  G+V RY  PI+L+   C F F L ++
Sbjct: 75  LYEGYVSRYLAPIFLI-DFCAFYFTLILL 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,379,968
Number of Sequences: 27780
Number of extensions: 166234
Number of successful extensions: 422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)