Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C04
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    36   0.008
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    28   1.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   2.9  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    27   3.8  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   3.8  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   3.8  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   3.8  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    27   3.8  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   3.8  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   5.0  
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    26   5.0  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.6  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +3

Query: 132 MGKGFNNYMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQDLHE 293
           MG G  N   KK +HP    N ++VW  EQ      K+ E+LR + E+E+ L E
Sbjct: 1   MGGGDLNM--KKSWHPLLMRNQEKVWKDEQAHKEEMKRVEQLRREIEEERQLLE 52


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 339 LNSI-CLYFLYLVMLCSHVDPVLFHIVIAILLVFSCMHLFSVLPSIPFSNC 190
           LN+I C++++Y + LC+     +  +    L +  CM   S+L S    NC
Sbjct: 36  LNTIVCIFYVYKIALCNE---YIRFLAKCFLYILRCMSTVSLLSSAHKMNC 83


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 309 LVMLCSHVDPVLFHIVIAILLVFSCMHLFSVLPSIPFSNCLLKRDGRIFYTYSY 148
           +V +C+H    L  +V  +L+ F  M  +SV+P     + +L        TYSY
Sbjct: 205 VVQICNHAR--LEDVVTEVLMFFDSMIRYSVIPKASLYDTVLILCSTYISTYSY 256


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 339 NFMYEPPPGVKKEREREDNEPEYKFE 416
           N+++ PPP  K     EDN PE+ FE
Sbjct: 169 NYIHVPPPSGKLCSLCEDNLPEWYFE 194


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 256 NSSCFFLYASVFCSAIHTLFKLSLEAGWKNFLHI 155
           NS+C  L   V C++I+ L    +E  W NFL +
Sbjct: 108 NSACLIL--GVVCTSIYLLGASCMEFIWDNFLQL 139


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 235 YASVFCSAIHTLFKLSLEA---GWKNFLHI*LLNPFPILFFTTSCVXRNC*TKR 83
           Y   F S I+ L  LS ++   GW NFL+I  +    + FFT   +     TKR
Sbjct: 91  YTMGFQSCINMLCFLSSQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKR 144


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 235 YASVFCSAIHTLFKLSLEA---GWKNFLHI*LLNPFPILFFTTSCVXRNC*TKR 83
           Y   F S I+ L  LS ++   GW NFL+I  +    + FFT   +     TKR
Sbjct: 91  YTMGFQSCINMLCFLSSQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKR 144


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 235 YASVFCSAIHTLFKLSLEA---GWKNFLHI*LLNPFPILFFTTSCVXRNC*TKR 83
           Y   F S I+ L  LS ++   GW NFL+I  +    + FFT   +     TKR
Sbjct: 91  YTMGFQSCINMLCFLSSQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKR 144


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 207 WMAEQKTDAYKKKQEELRLQYEKEQDLHE 293
           W  +++ +  +KK+EEL+ ++EK +  +E
Sbjct: 59  WKKQEQEEINRKKEEELKSKFEKLRQKNE 87


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 235 YASVFCSAIHTLFKLSLEA---GWKNFLHI*LLNPFPILFFTTSCVXRNC*TKR 83
           Y   F S I+ L  LS ++   GW NFL+I  +    + FFT   +     TKR
Sbjct: 91  YTMGFQSCINMLCFLSSQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKR 144


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 274 FSYCNRNSSCFFLYASVFCSAIHTLF 197
           FSYCN     FFL+A+V    +  LF
Sbjct: 331 FSYCNFGIKQFFLFAAVMIYDLLLLF 356


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 114 LVVKNKMGKGF-NNYMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKE 278
           L++K K  K F  N   +++    S +  ++        + Y++ +E+ R+Q EKE
Sbjct: 39  LILKAKTKKHFYKNVRPEEYIKKGSGERKRKFSKKSHLQELYERSEEKRRIQQEKE 94


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 144 FNNYMCKKFFHPASRD 191
           F NYMC+K F  ASR+
Sbjct: 511 FGNYMCQKLFVYASRE 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,908
Number of Sequences: 5004
Number of extensions: 51348
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)