Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C04
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    46   4e-05
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903...    40   0.002
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771...    28   6.9  
03_06_0676 - 35460281-35460648,35462097-35462382                       28   9.2  

>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/56 (39%), Positives = 34/56 (60%)
 Frame = +3

Query: 414 EWQRKYNAPRESYCKGDNEIRDQPFGILVRNVRCIKCHKWGHINTDKECTMYTLSM 581
           E++   NAPR    +     R +PFG+ VRNVRC++C  +GH + D+EC +  + M
Sbjct: 177 EFEVLKNAPR---LETGAPARVKPFGVEVRNVRCLRCGNYGHQSGDRECPLKDVIM 229



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
 Frame = +3

Query: 111 QLVVKNKMGKGFNN-YMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQDL 287
           ++ +K K G  +++ Y+ +K +HP S  N +R W+AEQ      ++QEE++ ++ +EQ+ 
Sbjct: 22  EVELKEKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQIHANRARRQEEVQREFAQEQEF 81

Query: 288 HEN----XXXXXXXXXXXXXXNFMYEPPPGVKKE 377
                                +FMY  PPG   E
Sbjct: 82  FRQTALFSKKDKEKMEIMKAVSFMYVRPPGYNAE 115


>08_02_1147 -
           24688686-24689729,24689875-24690036,24690339-24690368,
           24690713-24690860,24691302-24691489
          Length = 523

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/44 (36%), Positives = 31/44 (70%)
 Frame = +3

Query: 153 YMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQD 284
           ++ KK +H  S  N++RVW+AE+K    ++K +EL+ Q ++E++
Sbjct: 5   FLNKKGWHTGSLRNIERVWVAEEKEKEEQRKIQELKKQQDEERE 48


>03_02_0348 +
           7709894-7709926,7710516-7710604,7711202-7711277,
           7712019-7712214,7712449-7712832,7712884-7714804,
           7714906-7714966,7715952-7716371
          Length = 1059

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 286 RSCSFSYCNRNSSCFFLYASVFCSAIHTLF 197
           + CS  YCNRN  CF++   V+ S +  ++
Sbjct: 7   QQCSTVYCNRN-LCFWIIGCVYTSPVDGMY 35


>03_06_0676 - 35460281-35460648,35462097-35462382
          Length = 217

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 183 SRDNLKRVWMAEQKTDAYKKKQEELRLQYEK 275
           S D+ ++V  AE   +A +K+ EEL L+Y++
Sbjct: 171 SEDHERKVLEAEAHVNALQKQSEELLLEYDR 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,815,051
Number of Sequences: 37544
Number of extensions: 305012
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)