Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C04
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...   176   2e-44
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.     176   2e-44
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    33   0.22 
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    32   0.50 
Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    28   6.2  
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    28   6.2  
AY594354-1|AAT01444.1|  539|Caenorhabditis elegans cofactor-inde...    28   6.2  
AF039713-12|AAO12419.1|  521|Caenorhabditis elegans Hypothetical...    28   6.2  
AF039713-11|AAB96720.1|  539|Caenorhabditis elegans Hypothetical...    28   6.2  
Z81503-2|CAB04112.1|  517|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score =  176 bits (428), Expect = 2e-44
 Identities = 82/146 (56%), Positives = 100/146 (68%)
 Frame = +3

Query: 132 MGKGFNNYMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQDLHENXXXXX 311
           MGKGF N+M KK FHP++  NLK VW A QK     K+QEELR+ YEKEQ++  N     
Sbjct: 1   MGKGFQNFMSKKDFHPSAFRNLKMVWEARQKKSLEDKRQEELRVAYEKEQEILNNKALLG 60

Query: 312 XXXXXXXXXNFMYEPPPGVKKEREREDNEPEYKFEWQRKYNAPRESYCKGDNEIRDQPFG 491
                    +FMY+ P G+ K   RE+ + E KFEWQRKY APRE + KG+ EI+DQPFG
Sbjct: 61  DEKAKMGL-SFMYDAPAGMTK---REEPKEEPKFEWQRKYQAPREDWAKGNEEIQDQPFG 116

Query: 492 ILVRNVRCIKCHKWGHINTDKECTMY 569
           I VRNVRC KCHKWGHINTD+EC ++
Sbjct: 117 IQVRNVRCCKCHKWGHINTDRECPLF 142


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score =  176 bits (428), Expect = 2e-44
 Identities = 82/146 (56%), Positives = 100/146 (68%)
 Frame = +3

Query: 132 MGKGFNNYMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQDLHENXXXXX 311
           MGKGF N+M KK FHP++  NLK VW A QK     K+QEELR+ YEKEQ++  N     
Sbjct: 1   MGKGFQNFMSKKDFHPSAFRNLKMVWEARQKKSLEDKRQEELRVAYEKEQEILNNKALLG 60

Query: 312 XXXXXXXXXNFMYEPPPGVKKEREREDNEPEYKFEWQRKYNAPRESYCKGDNEIRDQPFG 491
                    +FMY+ P G+ K   RE+ + E KFEWQRKY APRE + KG+ EI+DQPFG
Sbjct: 61  DEKAKMGL-SFMYDAPAGMTK---REEPKEEPKFEWQRKYQAPREDWAKGNEEIQDQPFG 116

Query: 492 ILVRNVRCIKCHKWGHINTDKECTMY 569
           I VRNVRC KCHKWGHINTD+EC ++
Sbjct: 117 IQVRNVRCCKCHKWGHINTDRECPLF 142


>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
            W04A8.7 protein.
          Length = 1792

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 498  VRNVRCIKCHKWGHINTDKECTMY 569
            ++ +RC  CH +GH+ T++ C +Y
Sbjct: 1263 LQKMRCSACHAYGHMKTNRNCPLY 1286


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
            protein W04A8.7 protein.
          Length = 1792

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 498  VRNVRCIKCHKWGHINTDKECTMY 569
            ++ +RC  CH +GH+ T++ C +Y
Sbjct: 1263 LQKMRCSACHAYGHMKTNRNCPLY 1286


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 402 EYKFEWQRKYNAPRESYCKG 461
           EY++++Q +YN P+E+Y KG
Sbjct: 114 EYEYDYQSQYNKPKEAYMKG 133


>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 635 KTXCTNSHATDA*HGPHHETGSTASDCC*G 724
           +T C NS   D  H  HHE  S  S CC G
Sbjct: 18  QTNCQNSQRGDGLHHHHHEAAS-GSTCCGG 46


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 635 KTXCTNSHATDA*HGPHHETGSTASDCC*G 724
           +T C NS   D  H  HHE  S  S CC G
Sbjct: 18  QTNCQNSQRGDGLHHHHHEAAS-GSTCCGG 46


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 635 KTXCTNSHATDA*HGPHHETGSTASDCC*G 724
           +T C NS   D  H  HHE  S  S CC G
Sbjct: 18  QTNCQNSQRGDGLHHHHHEAAS-GSTCCGG 46


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 375 EREREDNEPEYKFEWQRKYNAPRESYCKGDNEIRDQ 482
           ER R+D+E   K E +RK  A  E   K + ++R Q
Sbjct: 123 ERRRQDDERRRKEEDERKAKADAEKIRKNEEKVRRQ 158


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 375 EREREDNEPEYKFEWQRKYNAPRESYCKGDNEIRDQ 482
           ER R+D+E   K E +RK  A  E   K + ++R Q
Sbjct: 123 ERRRQDDERRRKEEDERKAKADAEKIRKNEEKVRRQ 158


>AY594354-1|AAT01444.1|  539|Caenorhabditis elegans
           cofactor-independent phosphoglyceratemutase protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 162 KKFFHPASRDNLKRVWMAEQKTDAYKKKQEE 254
           K  F PAS  N+   W+AEQK   +   + E
Sbjct: 328 KSLFPPASNKNVLAEWLAEQKVSQFHCAETE 358


>AF039713-12|AAO12419.1|  521|Caenorhabditis elegans Hypothetical
           protein F57B10.3b protein.
          Length = 521

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 162 KKFFHPASRDNLKRVWMAEQKTDAYKKKQEE 254
           K  F PAS  N+   W+AEQK   +   + E
Sbjct: 310 KSLFPPASNKNVLAEWLAEQKVSQFHCAETE 340


>AF039713-11|AAB96720.1|  539|Caenorhabditis elegans Hypothetical
           protein F57B10.3a protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 162 KKFFHPASRDNLKRVWMAEQKTDAYKKKQEE 254
           K  F PAS  N+   W+AEQK   +   + E
Sbjct: 328 KSLFPPASNKNVLAEWLAEQKVSQFHCAETE 358


>Z81503-2|CAB04112.1|  517|Caenorhabditis elegans Hypothetical
           protein F14F7.2 protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 366 VKKEREREDNEPEYKFEWQRKYNAPRESYCKGDNEIRDQPFGILVRNVRCIKCHKWGHIN 545
           +++E +RE  +PE  F+   K    +   C     +R  P G L  + RC++  K G+  
Sbjct: 349 LQEEIDRECADPEVTFDQLSKL---KYMECVIKETLRMYPLGALANSRRCMRSTKIGNYE 405

Query: 546 TDK 554
            +K
Sbjct: 406 IEK 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,913
Number of Sequences: 27780
Number of extensions: 292685
Number of successful extensions: 1026
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)