Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C03
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    95   9e-21
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    28   1.1  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    28   1.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   1.9  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    27   3.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.4  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    26   4.5  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 95.1 bits (226), Expect = 9e-21
 Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = +1

Query: 328 SFFLKDLGPQVSWRNVFLAEYAGPLFVYLW-VYQRPWILYGTQTSSPEQVATVAAICWSA 504
           + ++KDLGPQ+ WR VF+ EY GPL ++L+ +    WI          Q   +A +    
Sbjct: 71  TIWVKDLGPQIGWRTVFMIEYLGPLVIHLFFILNYKWIYRKDYNLCLNQ--KIAFVLVML 128

Query: 505 HYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFA-LYVAYHVNHP 642
           H+ KR +E++F+HRFS  TMPL+N+F+NCA+Y L + L++AY +  P
Sbjct: 129 HFMKREYESIFVHRFSLATMPLRNIFKNCAHYHLLSGLFLAYFIYGP 175


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 240 DRQALKLEAKGKTLKDEDTLNSLNIQDGSKL 332
           +++  +L   G+ LKDE++L +  IQDG  +
Sbjct: 40  EKERQRLIYAGRVLKDEESLKTYKIQDGHSI 70


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -2

Query: 391 HIQLKTHSAKILEVQDLLKKSLDPS*ILREFRVSSSFNVLPLAS 260
           ++Q KT + K   +  ++KK      +++EF++ SSF+  P AS
Sbjct: 478 YVQQKTAAEKKEHISLIMKKLTKTLDLMKEFQLQSSFSDSPTAS 521


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 427  FDTPTSKQRVVQHIQLKTHSAKILEVQDLLKKSLDP 320
            + TP   +  +Q + L+    ++ +VQD+L K+LDP
Sbjct: 1043 YQTPEILRLNLQEVVLRVKMCQMGDVQDVLGKALDP 1078


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 237 PDRQALKLEAKGKTLKDEDTLNSLNIQDGSK 329
           P+ ++  +E  GK+L+D D+L+ L + +  K
Sbjct: 401 PESESYDVEMNGKSLEDSDSLSELYLTNEEK 431


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +1

Query: 442 YGTQTSSPEQV-ATVAAICWS-AHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFAL 615
           Y  ++  P +  ++V  I  S + Y +R F+   +  F    M LK   +N   Y     
Sbjct: 640 YSGESKEPNKADSSVVDIKQSDSSYRRRSFKKSLLTGFCLALMALKFAIQNMPPYD---- 695

Query: 616 YVAYHVNHPLYTAPCTTCYY 675
           Y  YH N  L+TA   T ++
Sbjct: 696 YTPYHPNEKLFTAGIWTIHF 715


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 408 LLVGVSKTVDFIWYTNVKS*ASSYSCSNMLVS 503
           L +   K+ DF WYT   + ++ YS S + +S
Sbjct: 168 LYLAQDKSADFQWYTKRAAISAIYSASELFMS 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,294
Number of Sequences: 5004
Number of extensions: 55099
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)