Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_C03
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 124 9e-29
07_01_0442 - 3348638-3349126,3349978-3350322 34 0.094
05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268... 29 2.7
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 2.7
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 29 3.5
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 29 4.7
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 29 4.7
02_05_0891 - 32554355-32555305 29 4.7
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808... 28 6.2
05_03_0483 + 14585581-14587977 28 8.1
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 124 bits (298), Expect = 9e-29
Identities = 59/120 (49%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Frame = +1
Query: 340 KDLGPQVSWRNVFLAEYAGPLFVYLWVYQRPWILY----GTQTSSPEQVATVAAICWSAH 507
KDLGPQV + +F EY GPL +Y Y P Y G + P Q T A W H
Sbjct: 107 KDLGPQVFYSTLFFFEYLGPLLIYPMFYYLPVYKYFGYEGERVMHPVQ--TYAMYYWCFH 164
Query: 508 YAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYVAYHVNHPLYTAPCTTCYYIGLG 687
Y KR+ ET F+HRFSH T P+ N+FRNCAYYW F Y+AY+ NHPLYT IG G
Sbjct: 165 YFKRIMETFFVHRFSHATSPVSNVFRNCAYYWTFGAYIAYYCNHPLYTPVSELQMKIGFG 224
>07_01_0442 - 3348638-3349126,3349978-3350322
Length = 277
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 475 ATVAAICWSAHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYVAY 627
A V + + H+ KR+ E LFIH++S G+MPL + Y + + Y
Sbjct: 98 AQVLSAALTVHFLKRILEVLFIHQYS-GSMPLNTAATISSSYLVITATMIY 147
>05_05_0121 +
22525782-22525998,22526526-22526609,22526797-22526820,
22527118-22527233,22527691-22527936,22528176-22528256,
22528666-22528782,22529139-22529492
Length = 412
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 451 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF-SH 555
Q++SPE + + +CW+ H A R +T+ + F SH
Sbjct: 318 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSH 353
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 451 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF-SH 555
Q++SPE + + +CW+ H A R +T+ + F SH
Sbjct: 322 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSH 357
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 237 PDRQALKLEAKGKTLKDEDTLNSLNIQDGSKL 332
P+RQ K+ KG LKD+ ++L ++DG KL
Sbjct: 39 PERQ--KIMVKGGILKDDADWSTLGVKDGQKL 68
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 631 HDKPHRGQTTNNMHSF*TSSSMASYHVKSDE 539
HDKP RG+TT+ S +S +S+H ++ E
Sbjct: 81 HDKPSRGETTSISWSGNSSYLASSFHPRATE 111
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = +1
Query: 574 NLFRNCAYYWL-FALYVA 624
N++R+ YYWL FA+YVA
Sbjct: 438 NMYRDLGYYWLRFAIYVA 455
>02_05_0891 - 32554355-32555305
Length = 316
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 445 GTQTSSPEQVATVAAICWSAHYAKRLFETLFIHRFSHGTMP 567
G + SSP++ A WS R+ E L HR HG++P
Sbjct: 124 GPKVSSPKRQAFHRI--WSTEDEVRILEALAAHRREHGSLP 162
>09_04_0483 +
17979566-17980019,17980242-17980321,17980431-17980895,
17981460-17981597,17982574-17982660,17982781-17982909,
17983034-17983225,17983393-17983479,17983707-17984378
Length = 767
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = +1
Query: 574 NLFRNCAYYWL-FALYVA 624
N++R+ YYWL FA+Y+A
Sbjct: 478 NMYRDLGYYWLRFAIYIA 495
>05_03_0483 + 14585581-14587977
Length = 798
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 655 EQCIGDGSHDKPHRGQTTNNMHSF*TSSSMASYHVK-SDE*TKFQTT 518
EQC+ D S D+P G N+ A + K S+E T +TT
Sbjct: 716 EQCVADRSIDRPEMGDVLRNLEVALKMQECAENNSKFSEETTSSKTT 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,168,840
Number of Sequences: 37544
Number of extensions: 349311
Number of successful extensions: 761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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