Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C03
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha...   145   2e-35
Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z71178-11|CAA94885.2|  309|Caenorhabditis elegans Hypothetical p...    28   5.5  
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical ...    27   9.7  
AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4 prot...    27   9.7  

>AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha
           reductase familyprotein 1 protein.
          Length = 308

 Score =  145 bits (352), Expect = 2e-35
 Identities = 66/123 (53%), Positives = 82/123 (66%), Gaps = 4/123 (3%)
 Frame = +1

Query: 334 FLKDLGPQVSWRNVFLAEYAGPLFVYLWVYQRPWILYGTQT--SSPEQVATVAAICWSAH 507
           +++DLGPQ++W+ VF+AEYAGPLFVY   Y RP  +YG     ++      +A   WS H
Sbjct: 78  YVRDLGPQIAWKTVFMAEYAGPLFVYPLFYLRPTFIYGQAAVNATMHPAVQIAFFAWSFH 137

Query: 508 YAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYVAYHVNHPLYTAPC--TTCYYIG 681
           YAKRLFET FIHRF + TMP  NL +NC+YYW FA +VAY VNHPL+T P       Y G
Sbjct: 138 YAKRLFETQFIHRFGNSTMPQFNLVKNCSYYWGFAAFVAYFVNHPLFTPPAFGDLQVYFG 197

Query: 682 LGG 690
           L G
Sbjct: 198 LAG 200



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 231 LYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFFKRSWTSSILAECVF 380
           L  +RQAL++E KGK L D+  L+ L +     + + R     I  + VF
Sbjct: 43  LTEERQALRVEPKGKPLADDQKLSDLGLSSQKAVLYVRDLGPQIAWKTVF 92


>Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical
           protein B0024.13b protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 481 VAAICWSAHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYV 621
           +A +  S H A+RL+ET+F+  +S   M L +      +Y +  + +
Sbjct: 157 LALLLISLHVARRLYETIFVSVYSDSRMNLFHYAVGIVHYIILPISI 203


>Z71178-11|CAA94885.2|  309|Caenorhabditis elegans Hypothetical
           protein B0024.13a protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 481 VAAICWSAHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYV 621
           +A +  S H A+RL+ET+F+  +S   M L +      +Y +  + +
Sbjct: 124 LALLLISLHVARRLYETIFVSVYSDSRMNLFHYAVGIVHYIILPISI 170


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
 Frame = +3

Query: 240 DRQALKLEAKGKTLKDEDTLNSLNIQDGSKLF----FKRSWTSSILAE 371
           D  + ++  +GK L+D  +L   NIQ+G+ ++     K S TSS++++
Sbjct: 232 DISSFRMVLRGKLLEDHHSLAYYNIQEGALIWLYSHLKMSETSSLMSQ 279


>AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical
           protein Y66A7A.4 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 504 TLCQKVV*NFVHSSLFTWYDAIEELVQKLCILLVVCP 614
           +LC ++  N + ++ F++  +  ++V +L  L+ VCP
Sbjct: 36  SLCYRIYGNMLDNTEFSFVVSFPQIVSQLSFLMSVCP 72


>AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4
           protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 504 TLCQKVV*NFVHSSLFTWYDAIEELVQKLCILLVVCP 614
           +LC ++  N + ++ F++  +  ++V +L  L+ VCP
Sbjct: 36  SLCYRIYGNMLDNTEFSFVVSFPQIVSQLSFLMSVCP 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,196
Number of Sequences: 27780
Number of extensions: 314172
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)