Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C03
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   2.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.5  

>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 258 LEAKGKTLKDEDTLNSLNIQDGSKLFFKRSWTSSILAE 371
           +E K  T+  ED +      +GSK  F+R    ++L +
Sbjct: 148 VEVKRDTINPEDVILIRRTGEGSKPIFEREEIKNVLTK 185


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 261 EAKGKTLKDEDTLNSLNIQDGSKLFFKRSWTSSILAE 371
           E K  T+  ED +      +GSK  F+R    ++L +
Sbjct: 149 EVKRDTINPEDVILIRRTGEGSKPIFEREEIKNVLTK 185


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 143 RATARQASRYRXKFDKXCKXKNPTEREEISIPRS 244
           R  A Q++R+R   D      + T   E S PRS
Sbjct: 235 RINAVQSTRHREADDAEESVSSETNHNERSTPRS 268


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 143 RATARQASRYRXKFDKXCKXKNPTEREEISIPRS 244
           R  A Q++R+R   D      + T   E S PRS
Sbjct: 235 RINAVQSTRHREADDAEESVSSETNHNERSTPRS 268


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 143 RATARQASRYRXKFDKXCKXKNPTEREEISIPRS 244
           R  A Q++R+R   D      + T   E S PRS
Sbjct: 235 RINAVQSTRHREADDAEESVSSETNHNERSTPRS 268


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 258 LEAKGKTLKDEDTLNSLNIQDGSKLFFKRSWTSSILAE 371
           +E K   +  ED +      +GSK  F+R    ++L +
Sbjct: 148 VEVKRDIINPEDVIPIRRTGEGSKPIFEREEIKNVLTK 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,409
Number of Sequences: 438
Number of extensions: 3741
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)