Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C01
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    28   1.2  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   2.1  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   4.8  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    26   6.3  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   6.3  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 540  YLISQERFAKCSKRDAQKQALTRATRYNRYTTPR-----ERTGRHYRTVTRRFRIPPPAR 704
            YL+ +E   + ++ D+ + ALT    Y+ Y   +     E T  +   V RRF+  PP+ 
Sbjct: 1036 YLLDEE--IQLTEHDSIEDALTALKLYDCYDKLKSQGKLEETLDNIYEVGRRFKFRPPSV 1093

Query: 705  GSQSXSDR 728
             S S  DR
Sbjct: 1094 ASMSLEDR 1101


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 470 ALDRVRQSPSNGVSTASPQQPTPVPHQPGKV 562
           A DR+  +PS+  ST SP +  P P  P  V
Sbjct: 409 AKDRLSLTPSSTPSTPSPAESLPQPSNPTSV 439


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 492 LPAMALVQPHRSSRRLYLISQERFAKCSKR 581
           LPA   VQ H  S   +L+ +E FAK S R
Sbjct: 9   LPAWQAVQTHYESVGKHLVLKELFAKDSSR 38


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 333 TRKNDETNKKNKIQTSLQNCIIN 265
           TR   +T +KNKI+ SLQ+  +N
Sbjct: 287 TRSEPQTPRKNKIRDSLQSSPLN 309


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 568 NVRRETHKSRH*QELPATTDTQHRENEP 651
           ++R E H SR  +++   +D  H EN P
Sbjct: 74  SIRDENHNSRKGKDVTLNSDEAHSENVP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,671
Number of Sequences: 5004
Number of extensions: 47355
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)