Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_C01
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0932 - 32841331-32842242 34 0.13
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 32 0.54
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615... 31 0.71
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 30 1.6
04_01_0441 - 5750765-5750822,5750936-5751026,5751112-5751313,575... 30 1.6
03_04_0029 - 16610182-16611753 28 6.6
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 28 8.7
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 28 8.7
>02_05_0932 - 32841331-32842242
Length = 303
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +2
Query: 479 RVRQSPSNGVSTASPQQPTPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKT 658
RVR P + PQ P P+P G V + RR KS P + N NR++
Sbjct: 84 RVRPDPQPSLLLPPPQPPPPMPESTGDVAEKKRGRRKNKNGAKSAPFACLLNALLCNRRS 143
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 485 RQSPSNGVSTASPQQPTP-VPHQPGKVRQMFEERRTKAGIDKSYPL--QPIHNTERTNRK 655
R SP++ STA PQ P P + P +++ E G+ + +P +P+ + + +
Sbjct: 255 RPSPASAPSTAPPQPPPPKISKSPSFIQEEIEVAEVLFGLTRQFPCPSKPVESNHKLEVR 314
Query: 656 TLP 664
P
Sbjct: 315 DAP 317
>07_01_0789 -
6150257-6151046,6151167-6151390,6151816-6151991,
6152778-6153801
Length = 737
Score = 31.5 bits (68), Expect = 0.71
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 437 IASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVP--HQP-GKVRQMFEERRTKA 595
I+SL+++ LD PS+ S + P P P HQP R++ E +R A
Sbjct: 208 ISSLFDSMPPPTLDTAAAEPSSSASAERREPPPPAPDEHQPSAAAREVAEGKRPAA 263
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 437 IASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVPHQPGKVRQMFEERRTKAGIDKSY 613
+AS++ ++R L RQ ++ A P P P P ++ M ERR + I+ S+
Sbjct: 286 LASVHMQTRSRELAAARQRDTHA---APPPPPPPPPPSSSQLHHMISERRRRERINDSF 341
>04_01_0441 -
5750765-5750822,5750936-5751026,5751112-5751313,
5751392-5752033,5752175-5752409,5752500-5752619,
5752864-5753282
Length = 588
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 506 VSTASPQQPTPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTE 640
+S+A+ +QP + H P ++MF +R A + P+ E
Sbjct: 295 LSSATDRQPVAMSHMPNSFKRMFSQRSAAAAAATTSTTSPLSKVE 339
>03_04_0029 - 16610182-16611753
Length = 523
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -2
Query: 560 PFLADEVQASAAAVRLY*RHCWEIASPGPRHAPVAL 453
PF A+ V+++ + +R Y WE+++P P A VAL
Sbjct: 472 PFGAEAVESARSLLRKY-DSGWEMSAPSPAAAAVAL 506
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 488 QSPSNGVSTASPQQPTPVPHQPGKVRQMF 574
+ PS A+P PTP+P QP Q +
Sbjct: 471 RGPSPPPQQAAPNSPTPLPRQPSLAPQSY 499
>10_07_0061 + 12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 383 LQMQARFQQKQLQERELKIASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVPHQP-GK 559
+Q+Q +FQQ LQ+++L+ L + QQ + +++Q QQ Q G
Sbjct: 1120 MQLQQQFQQNPLQQQQLQ--QLQQQQQQQQQQQIQQQQQQQQQQQQQQQQIQQQQQQMGS 1177
Query: 560 VRQMFEERRTKAGIDKS 610
Q + + AG +S
Sbjct: 1178 PLQQAAQVGSPAGSQQS 1194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,595,970
Number of Sequences: 37544
Number of extensions: 311521
Number of successful extensions: 1149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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