Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C01
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)                31   0.72 
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       29   2.9  
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   8.9  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
          Length = 1008

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 386 QMQARFQQKQLQERELKIASLYEAQQARALDRVRQSPSNGVS---TASPQQPTPVPH-QP 553
           QM+ R QQ  +Q+R+    +L +  Q +   R+  +P N  +   T +P  P   PH  P
Sbjct: 129 QMRTRNQQMMIQQRQRMQQNLQQQGQQQTPQRIAPAPPNTQNMRQTPTPPMPPKSPHGSP 188

Query: 554 G 556
           G
Sbjct: 189 G 189


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +2

Query: 347 STRMEKGGGSRLLQ--MQARFQQ-KQLQERELKIASLYEAQQARALDRVRQSP-SNGVST 514
           S+   +  GSR     +  RFQQ +Q Q ++ +    Y+A + +A  + +Q P S   S 
Sbjct: 664 SSDASRSSGSRYFNRTIPPRFQQQRQQQHQQYQQQQQYQASRPQAQHKQQQVPQSRDYSD 723

Query: 515 ASPQ--QPTPVP 544
           A PQ  +P P+P
Sbjct: 724 APPQAARPKPIP 735


>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = +2

Query: 398 RFQQKQLQERELKIASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVPHQPGKVRQMFE 577
           +  Q   + RE  I    +   A    R++  P +  +      P P PH+P  +  + E
Sbjct: 75  KIPQNMHRSREKTIRRYVDTTMASVDYRLKAGPISPYAFPQTVHPRPPPHRPKALMTVDE 134

Query: 578 ERRTKAGID-KSYPLQPIHNTERTNRKTLP 664
             RT+ G   +  P+  +    R +R++ P
Sbjct: 135 YFRTRKGSKRRKTPVHIVGKPRRISRRSPP 164


>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 530 PTPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKTLP 664
           PTP P+QP    Q  ++      I K+     ++ T+  N  TLP
Sbjct: 715 PTPTPYQPVSTVQYIDQYGDDNDIRKTQRQTKMYTTQHNNTSTLP 759


>SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 392 QARFQQKQLQERELKIASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVPHQ 550
           Q + QQ+QLQ+++L+   L + QQ +   + +Q          PQQ  P   Q
Sbjct: 88  QQQLQQQQLQQQQLQQQQLQQQQQQQQQLQQQQPQQQQQQQQQPQQQQPQQQQ 140


>SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 392 QARFQQKQLQERELKIASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVPHQ 550
           Q + QQ+QLQ+++L+   L + QQ +   + +Q          PQQ  P   Q
Sbjct: 87  QQQLQQQQLQQQQLQQQQLQQQQQQQQQLQQQQPQQQQQQQQQPQQQQPQQQQ 139


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
 Frame = +2

Query: 404  QQKQLQERELKIASLYEAQQARALDRVRQSPSNGVSTASP--QQPTPVPHQPGKVRQMFE 577
            ++K L E EL++ S  +A + + L++        V    P  ++PT    +P K + + E
Sbjct: 6181 EEKPLIEEELRV-SAEKAVEEKPLEKPIARKEKKVEEVKPKKEKPTEREAKPLKEKPLVE 6239

Query: 578  ERRTKAGIDKSY---PLQ-PIHNTERTNRKTLP 664
            E+     ++K+    PL+ PI   E+   K  P
Sbjct: 6240 EKELTVSVEKAVEEKPLEKPIARKEKKVEKVKP 6272


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 377 RLLQMQARFQQKQLQERELKIASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVPHQ 550
           +LLQ Q + Q K+LQE +LK     E QQ     +  +           +  TP  HQ
Sbjct: 408 KLLQEQQKLQHKKLQEEKLKHQKQEEEQQQLQHHKQEEEQLKHQQEQQHKTATPNSHQ 465


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +2

Query: 377  RLLQMQARFQQKQLQERELKIASLYEAQQARALDRVRQSPSN-----GVSTASPQQPTPV 541
            ++ Q Q + QQ+Q+Q+++ ++      QQ +     +Q P N       +T  P Q  P 
Sbjct: 1137 QMQQQQQQQQQQQIQQQQQQMQQQQLQQQMQQQQPPQQMPQNMPQQQQPATQLPSQGQPA 1196

Query: 542  PHQPGKVRQMFEE 580
            P    +  QMF++
Sbjct: 1197 PQYFQQQFQMFQQ 1209



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 377  RLLQMQARFQQKQLQERELKIASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVPHQPG 556
            ++ Q Q + QQ+Q Q+++++       QQ       +Q P   +    PQQ  P    P 
Sbjct: 1132 QIQQQQMQQQQQQQQQQQIQQQQQQMQQQQLQQQMQQQQPPQQMPQNMPQQQQPATQLPS 1191

Query: 557  K 559
            +
Sbjct: 1192 Q 1192


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 434 KIASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVPHQP 553
           K A  YE  Q +   + +  P    + A PQ+P P P QP
Sbjct: 405 KDAVKYEPPQQQPQQQRQSPPQPSPTGAPPQRPHPPPQQP 444


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 488  QSPSNGVSTAS-PQQPTPVPHQPGKVRQMFEERRTKAG 598
            +SPS G  + S P  P P P QPG    + +E    +G
Sbjct: 2309 RSPSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSG 2346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,167,113
Number of Sequences: 59808
Number of extensions: 373049
Number of successful extensions: 1183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)