Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B23
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.96 
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   6.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +1

Query: 439  RPGLHCPSLHCPSLHCPSLHRPSLHRPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIH 618
            +P +  P +  PS   P +  PS   P +  P+   P + +PS   PS+  P    P  H
Sbjct: 1202 KPSVGVPPVPPPST-APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPH 1260



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +1

Query: 457  PSLHCPSLHCPSLHRPSLHRPSLHRPSLHRPNLRSPS----IHRPSIYCPGLRCP 609
            P +  PS   P + +PS+  P + +PS+  P + +PS    + +PS+  P +  P
Sbjct: 1083 PPVPAPS-GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 457  PSLHCPSLHCPSLHRPSLHRPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIHRP 624
            P +  PS+  P +  PS   P + +PS+  P + +PS   P +  P    P +  P
Sbjct: 1140 PPVPKPSVAAPPVPAPS-GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 93  EASATVXEGNKNQLEHCSCLCVS 25
           E   T    N   LE+C CLCVS
Sbjct: 214 EEITTFYSSNYFGLENCECLCVS 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,119,830
Number of Sequences: 5004
Number of extensions: 16334
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)