Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_B22
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 105 5e-24
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S... 63 3e-11
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 52 6e-08
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 29 0.86
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 4.6
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 4.6
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 8.0
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 8.0
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 8.0
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 105 bits (253), Expect = 5e-24
Identities = 48/108 (44%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Frame = +2
Query: 116 EDELTLPRASINKMIKELVPSVRVAF--ESRELILNCCTEFIHLISSEANEVCNQSNKKT 289
+DEL+LP+A++ KM+ +++P V + F E+R+L++ CC EFIHL+SSEANE+C + KKT
Sbjct: 7 DDELSLPKATVQKMVSDILP-VDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKT 65
Query: 290 INAEHVLTALDRLGFSDYTIEAEAVLKDCKAVAAKRRRQSTRLENLGI 433
I AEH++ AL+ L F +Y EA V + K R ++S++ E G+
Sbjct: 66 IAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGV 113
>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 116
Score = 63.3 bits (147), Expect = 3e-11
Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +2
Query: 131 LPRASINKMIKELVP-SVRVAFESRELILNCCTEFIHLISSEANEVCNQSNKKTINAEHV 307
LP A++ +++K +P + +++ E+++ + +C +EFI ++ EA+E C Q +KTI E V
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71
Query: 308 LTALDRLGFSDY 343
L AL+ LGF +Y
Sbjct: 72 LLALNTLGFENY 83
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 52.4 bits (120), Expect = 6e-08
Identities = 24/80 (30%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +2
Query: 110 SEEDELTLPRASINKMIKELVPSVR-VAFESRELILNCCTEFIHLISSEANEVCNQSNKK 286
SE D+L LPR+ I +++K ++P V E+ + ++N T F+ ++S + E+ +N+K
Sbjct: 10 SELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRK 69
Query: 287 TINAEHVLTALDRLGFSDYT 346
+ + VL ALD + + +++
Sbjct: 70 ILMPQDVLNALDEIEYPEFS 89
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 28.7 bits (61), Expect = 0.86
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 146 INKMIKELVPSVRVAFESRELILNCCTEFIHLISSEANEVCNQSNKKTINAEHVLTALDR 325
IN ++E+ S+R+AF R F ++S+ +NE+ N +HV +
Sbjct: 362 INTHMREIKESMRIAFADR------ANSFSKMLSTISNEITNLQGDWRDQLDHVEFLQEH 415
Query: 326 LGFSDYTIEAEAVLKD 373
LG + + + VL D
Sbjct: 416 LGPLEVELASVKVLYD 431
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -2
Query: 303 CSALIVFLLL*LHTSLASELIKCMNSVQQFRINSLDSNATRTEGTNSFIILF 148
CSA+++FL +H + L++ + ++ ++DS R E S I +F
Sbjct: 699 CSAIVLFLFSVMHLGAENPLLESIYLLEDMGSRTIDSK-VRLEKLKSAIEIF 749
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 35 HKKIEVGVHKFVTMGSPERELCPPPSEEDELTLPRASINKMIKE 166
+ +EVGV ++ P+ PP S + PR+S N +K+
Sbjct: 461 YNSLEVGVDRYELGLDPQNITVPPLSHKTYQISPRSSANINVKK 504
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 17 SWPKGYHKKIEVGVHKFVTMG-SPERELCPPPSEEDELTLPRASINKMIKEL 169
SW + K+ V TM + P + + TLP+AS NK KE+
Sbjct: 506 SWRESMVNKLRSSVSDSPTMNLANSNSKSSPVAVQRVSTLPQASANKQAKEM 557
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 200 RELILNCCTEFIHLISSE-ANEVCNQSNKKTINA 298
R+L+ NCC E + +N + K +INA
Sbjct: 506 RQLLYNCCVEISQFSREDFSNSLSENKTKDSINA 539
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +2
Query: 260 EVCNQSNKKTI-NAEH-VLTALDRLGFSDYTIE---AEAVLKDCKAVAAKRRRQSTRLEN 424
E C S +++I +A H L L + DY +E + A +K K A + ++ LEN
Sbjct: 98 EKCLPSPRQSIRDASHQALLILAKSDALDYVLEGLFSAARVKHPKQAVASIKELNSLLEN 157
Query: 425 LGIP 436
GIP
Sbjct: 158 FGIP 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,898
Number of Sequences: 5004
Number of extensions: 36219
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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