Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B22
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)                   28   6.4  
SB_5071| Best HMM Match : RIO1 (HMM E-Value=0)                         28   6.4  
SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)                 28   8.5  
SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)           28   8.5  

>SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)
          Length = 892

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = +2

Query: 95  LCPPPSEEDELTLPRASINKMIKELVPSVRVAFESRELILNCCTEFIHLISSEANEVCNQ 274
           L   P+E D+L      + +MI  L    ++  + R+ ++      + ++S EA EV + 
Sbjct: 158 LMEKPTETDDLNSENCRLREMILSLKEENKILTQERDSLIFA----LQIVSREAMEVLDT 213

Query: 275 SNKKTIN 295
           S++  +N
Sbjct: 214 SSETDVN 220


>SB_5071| Best HMM Match : RIO1 (HMM E-Value=0)
          Length = 556

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 68  VTMGSPERELCPPPSEEDELTLPRASINKMIKELVPSVRVAFE 196
           V MG    E+ P P       L     +K+IKELV    +A++
Sbjct: 23  VEMGMKNHEIVPTPLVASIAALKHGGCHKLIKELVKHKLIAYD 65


>SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)
          Length = 771

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 462 KNCLQRLVRNKQNKNSNSG 518
           K+CL++  R+ QNKN +SG
Sbjct: 251 KSCLRKQARHSQNKNGSSG 269


>SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)
          Length = 835

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 92  ELCPPPSEEDELTLPRASINKMIKELVP 175
           E+CPP   +DE   P  SI++ I   +P
Sbjct: 315 EMCPPSHNKDEQQDPNVSISEFIPAPIP 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,365
Number of Sequences: 59808
Number of extensions: 261764
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)