Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B20
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    28   1.6  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    26   5.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   8.7  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.7  

>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 407 PRRKLMIQMLPSRMDRALKAWQPQENVFLDRYLSLR 514
           P   L I+ L   +  +L+  +P+ N+F DRYLSL+
Sbjct: 348 PNNPLEIK-LGDELTSSLRELKPEGNLFADRYLSLQ 382


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 532 LKHNGSAKDLASVMENLKKGGLVSRQNQSL 621
           L++N   + +ASV+ NL +G   SRQN S+
Sbjct: 164 LENNAITEIMASVIANLVEGHFGSRQNGSV 193


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 4   PADDSCESAPT--PTRFERQPTDRPNRLPPTVYSATCAL 114
           PAD   +  P   P RFER PT  P+ +   VYS T  L
Sbjct: 374 PADGVPKPTPDGFPRRFERDPTIPPDSI--KVYSRTLFL 410


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +1

Query: 358 PADEPPAVGAADEQLRAETEANDSDAAESD----GSRTESMAAARERFFGQIPELTLDGS 525
           P    PAV    + + ++ + +D D   S     G   +SM  A++ F  +IP    +  
Sbjct: 295 PKKSKPAVFKPVKPIFSDEDEDDDDLTASQPFSKGICNDSMQVAKKNFTEEIPLKEDEKD 354

Query: 526 NSLKH 540
           N L+H
Sbjct: 355 NELEH 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.124    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,358
Number of Sequences: 5004
Number of extensions: 42432
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)