Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_B20
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310... 31 1.3
06_03_0187 - 17669618-17669665,17669916-17670065,17672546-17673073 31 1.3
12_01_0156 + 1188143-1189957 30 2.3
11_01_0158 + 1307648-1309462 30 2.3
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 30 2.3
11_01_0621 - 4981070-4981136,4982906-4983825 29 3.9
04_01_0101 + 1041755-1041864,1041950-1042102,1042174-1042424,104... 29 3.9
01_04_0138 + 16554175-16554822 29 3.9
09_04_0468 + 17848144-17848174,17849032-17849378,17849505-17849921 29 5.2
07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934 29 5.2
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 28 6.9
12_01_0419 - 3316866-3318172,3318249-3318360 28 6.9
05_07_0140 - 27982037-27983794 28 6.9
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 28 6.9
04_01_0208 + 2596110-2596928 28 9.1
>06_03_0766 -
24425486-24426245,24430766-24430855,24430951-24431070,
24431568-24431746,24432046-24432231,24432454-24432547,
24432679-24432743,24433652-24433987
Length = 609
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 373 PAVGAADEQLRAETEANDSDAAESDGSRTESMAAARERFFGQIPELTLD 519
P + AA E+LRAE E S E D + + AA R + Q T+D
Sbjct: 59 PGLRAASERLRAEPERRISSGPEEDDADAAAAAAPRHVYVFQREFATVD 107
>06_03_0187 - 17669618-17669665,17669916-17670065,17672546-17673073
Length = 241
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 376 AVGAADEQLRAETEANDSDAAESDGSRTESMAAARERFF 492
A+ A ++ AE A D+ + +G TE+MAA R RF+
Sbjct: 110 ALKRATDEAAAEVAAEDARQSGVEGKITEAMAAGRRRFW 148
>12_01_0156 + 1188143-1189957
Length = 604
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 361 ADEPPAVGAADEQLRAETEANDSDAAESD 447
A + A G AD+ LR E DSDA++SD
Sbjct: 152 ASDLSAQGEADDHLRVAEEDEDSDASDSD 180
>11_01_0158 + 1307648-1309462
Length = 604
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 361 ADEPPAVGAADEQLRAETEANDSDAAESD 447
A + A G AD+ LR E DSDA++SD
Sbjct: 152 ASDLSAQGEADDHLRVAEEDEDSDASDSD 180
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 358 PADEPPAVGAADEQLRAETEANDSDAAES 444
PA+E P G ADE LR E E + DA +
Sbjct: 125 PAEEAPPEGPADEGLRGEGERIEMDATRA 153
>11_01_0621 - 4981070-4981136,4982906-4983825
Length = 328
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 355 PPADEPPAVGAADEQLRAETEANDSDAAESDGSRTESMAAARERFFGQIPELTLDGSNSL 534
PP PP A A A +A++ G T + A ++R G+ ++D S SL
Sbjct: 137 PPPPTPPPPTAEATITAAAAGAMGEEASKKQGKSTTAKTARKQRTIGRTRSRSMDRSVSL 196
>04_01_0101 +
1041755-1041864,1041950-1042102,1042174-1042424,
1042878-1043060,1043163-1043310,1043787-1043958,
1057226-1057366,1057478-1057624
Length = 434
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 295 PPPLLMPSEQTRCLSHYQHRCFSCLHL*VLLISSFC 188
PPP++ Q L +YQ R FS L + ++S FC
Sbjct: 352 PPPMVGIQAQAAPLDNYQARAFSLLD--IAVVSGFC 385
>01_04_0138 + 16554175-16554822
Length = 215
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +1
Query: 364 DEPPAVGAADEQLRAETEANDSDAAESDGSRTESMAAARERFFGQIPELTLDGSNSLKHN 543
D P A Q R S A+ G R E A RER ++ E DG +S +
Sbjct: 42 DRPQRAAARSHQQRRGAGGTGSSGAQR-GKRREETEAVREREVAELTEGHGDGESSRRRE 100
Query: 544 GSA 552
+A
Sbjct: 101 AAA 103
>09_04_0468 + 17848144-17848174,17849032-17849378,17849505-17849921
Length = 264
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 361 ADEPPAVGAADEQLRAETEANDSDAAESDGSRTESMAAARERFFGQIP 504
+D PPA G + ND DAA + + T+++A F G P
Sbjct: 153 SDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDALAPEACTFLGAPP 200
>07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934
Length = 363
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +1
Query: 346 QTSPPADEPPAVGAADEQLRAETEANDSDAAESDGSRTESMAAARERFFGQIPELTLDGS 525
QT PP PP A + +T+AN AE E AA E+ P +T +
Sbjct: 289 QTPPPHMAPPPPQPAKDT-GGDTDANKDGEAEKAAGEIEKKAAGGEKEAAAGPPVTAAAA 347
Query: 526 NSLKHNGSAKD 558
+ N +A +
Sbjct: 348 ADAQANKAAAE 358
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Frame = +3
Query: 534 ETQRQRQRLGIRHGESKEGRTGLQTKPVLKYTSHXFDATDGLQYY-----VEXRGL---- 686
E + + + + H ++ + RTGL +L Y A + ++YY V+ +GL
Sbjct: 252 EGKEDIENVVVVHCKAGKARTGLMISSLLLYLKFFPTAEESIEYYNQKRCVDGKGLILPS 311
Query: 687 QSAYAKFFPKTAXHGNFGNE 746
Q Y K+F + + N N+
Sbjct: 312 QIRYVKYFERILTYFNGENQ 331
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 373 PAVGAADEQLRAETEANDSDAAESDGSRTESMAAARER 486
PAV DE R + E+ DS+ SD + + RER
Sbjct: 126 PAVSGGDEGRRLDVESADSECGSSDVEDFDVESGPRER 163
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 346 QTSPPADEPPAVGAADEQLRAETEANDSDAAESDGSRTESMAAARERFFGQIP 504
Q P ADE PA G +EQ + + ++ + + + R R GQ P
Sbjct: 377 QEPPAADETPAAGEPEEQPKPRSSDSEDYSTSGEEGDGANRGGGRRRPRGQGP 429
>05_07_0140 - 27982037-27983794
Length = 585
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 346 QTSPPADEPPAVGAADEQLRAETEANDSDAAESDGSRTESMAAA 477
Q PP+D+ V A E++ A EA ++AA S G E A A
Sbjct: 542 QVRPPSDD---VDATAEEMDAAAEAEANNAAASAGGEGEKSAEA 582
>03_06_0769 +
36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +3
Query: 183 EEQKEEIKRTQRCKQEKQR 239
E+++E+IKR +R KQE+Q+
Sbjct: 801 EQEEEQIKRLERLKQERQK 819
>04_01_0208 + 2596110-2596928
Length = 272
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 524 ATV*NTTAAPKTWHPSWRI*RRADWSPDKTSP*IHKSLXRRNRW 655
AT + A + W P+WR RRA S ++ P + + R RW
Sbjct: 33 ATYRSRPEAGRYWTPTWRPLRRAS-SEEEVMPGMRAASRSRGRW 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.124 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,839,339
Number of Sequences: 37544
Number of extensions: 341631
Number of successful extensions: 1050
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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