Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B18
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.8  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   4.8  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   4.8  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   6.3  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   6.3  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 579 YRLKIVQTIFLNCIIR-SIWNH 517
           YR +++   FLNC I  SI NH
Sbjct: 280 YRFRVINAGFLNCPIEVSIDNH 301


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 127 IIGIVVNCSVYMTIRLIQIYVVLAKYY 207
           +IG   NC ++M    + + VV+  Y+
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 127 IIGIVVNCSVYMTIRLIQIYVVLAKYY 207
           +IG   NC ++M    + + VV+  Y+
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYH 299


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 574 IENCTNYIFKLYY 536
           I+NC   IF+LYY
Sbjct: 255 IKNCVIVIFELYY 267


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 571 ENCTNYIFKLYY 536
           +NC  Y+F L+Y
Sbjct: 197 KNCVTYVFDLFY 208


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 574 IENCTNYIFKLYY 536
           ++NC +Y F LY+
Sbjct: 280 VKNCLSYCFNLYH 292


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 574 IENCTNYIFKLYY 536
           ++NC +Y F LY+
Sbjct: 280 VKNCLSYCFNLYH 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,498
Number of Sequences: 336
Number of extensions: 3796
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)