Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B18
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    32   0.11 
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   5.3  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    26   7.0  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = +2

Query: 293 KLNLI*SLFNSYS*RKIYFQYIY*CDDIVMNG*VAHFYWPNNNYYIILIRNEDII 457
           K NL+ SLF+ YS   IYFQ I  C +I  +   A F    NN +I   R E  I
Sbjct: 385 KSNLVHSLFDYYSLNSIYFQMIVSCSEIDRSS-FAKFQSFWNNVFIQAERYEPSI 438


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 293 CNLSHYAVFVLSIIIPNYK 237
           C  +HY+V  L + +PNY+
Sbjct: 230 CKKNHYSVITLDLDVPNYE 248


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 136 IVVNCSVYMTIRLIQIYVVLAKY 204
           IV+ CS YM I+   +Y+VL  Y
Sbjct: 278 IVILCSTYMAIQYGILYLVLTTY 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,363
Number of Sequences: 5004
Number of extensions: 57758
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)