Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B18
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine rec...    30   2.1  
AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine re...    29   3.7  

>U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical
           protein C48B6.8 protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 457 NDVFIPY*NNIIVIIWPIKMSYLSIH 380
           +D F+P  NNI+ ++ P K++Y  +H
Sbjct: 70  SDNFLPSMNNILAVLSPTKLTYYKVH 95


>U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 34 protein.
          Length = 355

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 201 ILCCCSNNSFNKFVIWYNYRKDKNRIVRQIAN*ISFNHYLI 323
           I  C S N+   F+ W N +KDK  +  Q++   S N  L+
Sbjct: 200 IAICLSLNTIGWFISWRNLKKDKFNLAVQMSKQESINSSLV 240


>AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine
           receptor, class x protein39 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 579 YRLKIVQTIFLNCIIRSIWNH*CTFSNLFFSLERAQHF*DLMMSSFR 439
           YR+ +   +F  CI+  I+++  T   LFF +   Q+F D    +FR
Sbjct: 111 YRM-MFSVLFTFCIVMGIYSYALTIITLFFQILGCQNFYDQETRAFR 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,658,029
Number of Sequences: 27780
Number of extensions: 310533
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)