Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B16
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.28 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.28 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -1

Query: 594 FCIPEAANTKKLISSNSLQTLKTFFIYILKTY--TCFFFKFHLSFHRRLRTTLVSIYLCL 421
           F +P  +  K  +S + L +L  FF+ +++    T       L  +      LVSI +C+
Sbjct: 266 FYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPL-LGKYLIFAMILVSISICV 324

Query: 420 RIVVLSLSTLAPE 382
            +VVL++   +P+
Sbjct: 325 TVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -1

Query: 594 FCIPEAANTKKLISSNSLQTLKTFFIYILKTY--TCFFFKFHLSFHRRLRTTLVSIYLCL 421
           F +P  +  K  +S + L +L  FF+ +++    T       L  +      LVSI +C+
Sbjct: 266 FYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPL-LGKYLIFAMILVSISICV 324

Query: 420 RIVVLSLSTLAPE 382
            +VVL++   +P+
Sbjct: 325 TVVVLNVHFRSPQ 337


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 202 GRHEVDHDELVAG 164
           G H+VD DEL+ G
Sbjct: 122 GDHDVDKDELITG 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,781
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)