Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_B11
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 322 3e-89
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 2.3
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 27 3.1
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.4
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 7.1
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 25 9.4
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 25 9.4
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 25 9.4
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 25 9.4
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 322 bits (792), Expect = 3e-89
Identities = 148/199 (74%), Positives = 174/199 (87%), Gaps = 1/199 (0%)
Frame = +2
Query: 194 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 373
YK+AD LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6 YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65
Query: 374 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 550
L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L FP GKP
Sbjct: 66 LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125
Query: 551 LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSV 730
LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF+E LKVPAINVNDSV
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSV 185
Query: 731 TKSKFDNLYGCRESLLDGI 787
TKSKFDNL+GC+ESL+DGI
Sbjct: 186 TKSKFDNLFGCKESLVDGI 204
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +2
Query: 92 PIYFRYFNKNNLKRKQQVNLP*VYQTLYYKMKPPYKIADEKL--AEWGRKEIMLAEKEMP 265
P YF + KN + LP YQ + + PPY KL G KE +A + P
Sbjct: 8 PYYFTH-EKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKP 66
Query: 266 GLMACRRKYAPA 301
A R Y P+
Sbjct: 67 SSKA-TRPYIPS 77
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -3
Query: 325 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 158
Y + ++W F T +K H+FL H + P + F+ F V S+++
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 684 RNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGF 544
RN+L++ CT + + F++ G L + K VK P + + + RGF
Sbjct: 282 RNLLFE-CTEQEL-----YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 235 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 414
R+Y R ++PY S SS S ++ STNS N SR T + +
Sbjct: 90 RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149
Query: 415 H 417
H
Sbjct: 150 H 150
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 578 DLTNLVHTKYPDLLKDVKG 634
D N + TK+P ++KDV+G
Sbjct: 376 DRLNKLQTKFPHVMKDVRG 394
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 545 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRE 688
K +N + G++ + P LK V GI ++ +G HN+YK FR+
Sbjct: 45 KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 285 RRHAIRPGISFSANIISFRPHSANFSS 205
R A++PG + +I +RP NF+S
Sbjct: 31 RERAVKPGYTAPEDIKRYRPGRGNFAS 57
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 545 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRE 688
K +N + G++ + P LK V GI ++ +G HN+YK FR+
Sbjct: 45 KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,522
Number of Sequences: 5004
Number of extensions: 68924
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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