Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_B10
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 35 0.089
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 30 1.9
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845 30 1.9
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 30 2.5
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 4.4
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 4.4
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 29 4.4
05_01_0185 + 1305006-1305218 29 5.8
05_01_0181 - 1280296-1280508 29 5.8
03_02_0520 + 9092020-9092079,9092253-9093047 29 5.8
11_06_0344 + 22540436-22540737,22541304-22543545 28 7.7
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 7.7
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 28 7.7
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 7.7
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 34.7 bits (76), Expect = 0.089
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -2
Query: 189 LRRWTFSSRGADPAVPTPHTTSVGGANDRDHRGPTQEDPSSCLSMMRFYVKQAAVASKAG 10
LR+ T S+ A PA+P+ TS + DH G Q+ + L + ++Q SK G
Sbjct: 950 LRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRLQATLQLAATLLQQIQQQSKPG 1009
Query: 9 GR 4
G+
Sbjct: 1010 GQ 1011
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 497 NRIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 667
++I S + S +I A+ RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 380 HKIGPVEESASLPSMEMIPAI-RNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
Length = 439
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -2
Query: 321 FIRDLVEKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 148
F+ D + SG+ + LM+ ALR +V F L R W FS G P
Sbjct: 9 FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68
Query: 147 VPTP 136
+P
Sbjct: 69 QSSP 72
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 527 AYASTTLISAV--VRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWL 694
+Y S L+S V R K+S++ + C L C S CG F T CA +L
Sbjct: 290 SYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYL 348
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 431 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 532
+R P QTPDA A + T+P ++ +A +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 364 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 498
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 469 VCTNFNETWQSDCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEM--SD 642
+CTN + DC R C D+ QCRG + + E G C ++ + +E+E+ SD
Sbjct: 232 MCTNVRLVF--DCT--RDGCRRKDSWAQCRGCFFCVARCETCGGCIDLEELSETELACSD 287
Query: 643 FPRRMRDWL 669
F M WL
Sbjct: 288 F-LCMECWL 295
>05_01_0185 + 1305006-1305218
Length = 70
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 162 GADPAVPTPHTTSVGGANDRDHRGPTQEDPSSCLSM 55
GADP V +PH GG D RG + SC +
Sbjct: 3 GADPTVSSPHARGFGGGG--DGRGGSDSLSPSCADL 36
>05_01_0181 - 1280296-1280508
Length = 70
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 162 GADPAVPTPHTTSVGGANDRDHRGPTQEDPSSCLSM 55
GADP V +PH GG D RG + SC +
Sbjct: 3 GADPTVSSPHARGFGGGG--DGRGGSDSLSPSCADL 36
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 234 VLDVFSLRDVPAAELLRRWTFSSR 163
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 575 TFKSSITERAEKCLTALKARCLTSP 649
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 350 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 493
+T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -2
Query: 234 VLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHTTSVGGANDRDHRGPTQEDPSSCLSM 55
+LDV +++ VP +L+RWT ++ + G N H P + S+
Sbjct: 319 ILDVNNIKSVPQQYILKRWTIDAK----------VLHISG-NSNMHDDPRIKISDRYSSL 367
Query: 54 MRFYVKQAAVASKA 13
R +V+ A+ A+K+
Sbjct: 368 CRMFVRIASTAAKS 381
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 297 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 163
+ + G F + L AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,352,240
Number of Sequences: 37544
Number of extensions: 495573
Number of successful extensions: 1497
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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