Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B09
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    47   2e-07
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               26   0.45 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 47.2 bits (107), Expect = 2e-07
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 6/171 (3%)
 Frame = +3

Query: 258 RGAHVSIIGRDENKLKSAVEEITSQCLDKSVQSIQYAVLDVTSDYFVIEKAINSLEDNVG 437
           +G  V  I    +K+K+ VEE+ S+     +  +Q    D+++   ++ K I  +E N+G
Sbjct: 30  KGMKVIGIAPQVDKMKTLVEELKSK--PGKLVPLQ---CDLSNQNDIL-KVIEWVEKNLG 83

Query: 438 PIFMLVNCAGMCICGKFEQMKVEDIKQMIDLNYFGSAYMTKCVLPGMKKK--KEGLIVFV 611
            I +L+N A + I    +  +V D K++ D+N  G   M + VL  MKKK    G+IV +
Sbjct: 84  AIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNI 143

Query: 612 CSEAALIGI---YGYTAYSAGKWAVRGLXEALSMELIGTGVRV-MISYPPD 752
              + L  +       AY A K A+  L + L  EL      + +IS  PD
Sbjct: 144 NDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPD 194


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 444 FMLVNCAGMCICGKFEQMKVEDIKQMID 527
           +M+V C  + +C K E + ++DI  +++
Sbjct: 16  YMMVRCDDITLCLKQENLNLDDIDSLLE 43


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 MKKKKEGLIVFVCSEAALIGIYGYT 650
           ++K+KE  I  VC  + LIG++  T
Sbjct: 411 LRKRKELFIAIVCFVSYLIGLFCIT 435


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 MKKKKEGLIVFVCSEAALIGIYGYT 650
           ++K+KE  I  VC  + LIG++  T
Sbjct: 464 LRKRKELFIAIVCFVSYLIGLFCIT 488


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 569 QNTFCHIRTAKIIQVNHLFYILYLHLFKFTTYTHAGAVY 453
           QNTFC+ R       N + + L LH          GAV+
Sbjct: 535 QNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVW 573


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 354 SIQYAVLDVTSDYFVIE 404
           +IQYA+   T +Y++IE
Sbjct: 109 NIQYALNPNTEEYYIIE 125


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 358 FNMQFWMLHLTIS 396
           FN+ +W+++L IS
Sbjct: 419 FNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 358 FNMQFWMLHLTIS 396
           FN+ +W+++L IS
Sbjct: 419 FNLMYWIIYLHIS 431


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 567 KHILSYTHCQNNSSQSSV 514
           K ++  THC NN+   ++
Sbjct: 406 KELIRNTHCVNNNQNDNI 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,765
Number of Sequences: 438
Number of extensions: 4388
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)