Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B08
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   4.1  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    25   9.5  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 466  EAQRNSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLT 612
            +++ NS  ++ VC  +  RLG  C++ S      +K LF+C D+D  LT
Sbjct: 950  DSENNS--LNLVCSDTSSRLGIDCFYISQ-----KKLLFSC-DKDRLLT 990


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 169 FHENIRVNLLKCCYVSCYSFSLQLTQVFQSSSFSYNTK 282
           FH +I + LL+C Y++C S  +++  +  +SS + +++
Sbjct: 681 FHMHINLELLECVYLTC-SMLMEIPAMAAASSTASDSR 717


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 711 AGVVYSSDPTTIFLDRFFVKVVSKILILPTSW 616
           A +VY+++    FLD FF++V+ K +    +W
Sbjct: 252 AKLVYANEGFRGFLDGFFLRVLRKSISSTITW 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,572
Number of Sequences: 5004
Number of extensions: 66213
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)