Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B08
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    31   1.4  
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    30   2.5  
12_02_1137 - 26392399-26392613,26392828-26393233                       29   3.3  
02_03_0243 - 16791789-16793306                                         28   9.9  

>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
            2053164-2053250,2053476-2053684,2054115-2054340,
            2054473-2054510,2054657-2054714,2055363-2055662,
            2055832-2055903,2055988-2056112,2056240-2056312,
            2056417-2056521
          Length = 1218

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 5    RPMGITFVQPRREAGRLTDPMPPVVHKT-PTRERAQNPE 118
            RP G     PRR A R T   PP V  T P RER Q  +
Sbjct: 1026 RPAGAVPPTPRRAALRATTRSPPAVAATPPPRERVQQQQ 1064


>02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192,
            33817363-33817539,33817638-33817964,33818067-33818192,
            33818518-33818622,33818815-33820125,33820221-33820382,
            33820416-33820517,33820549-33821272,33821358-33821451,
            33821824-33821986
          Length = 1285

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 607  LTVPARWEDKNLRNYLNKKSIKKYSRWIGGIYDSGDKEWKWG 732
            +TVP RW+D  ++N    + +   +R IG + D  D+E+  G
Sbjct: 1199 ITVP-RWDDTEIKNTKETEILHPRTRSIGYVLDEWDEEYDRG 1239


>12_02_1137 - 26392399-26392613,26392828-26393233
          Length = 206

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 103 RTESRTYRDTLETNNQISNGFLFHENIRVNLLKCCYVSCYSFSLQ 237
           R   R       +N+ +S+G+ F  ++ V L +CC + CY    Q
Sbjct: 32  RRSERVAGSRWSSNSGVSHGWTFVSDLEV-LTRCCMIDCYGGDAQ 75


>02_03_0243 - 16791789-16793306
          Length = 505

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 44  AGRLTDPMPPVVHKTPTRERAQNPELIAIR*KQIIKFRTV 163
           AG    P PPV+ +T  RER    +++  R    +K  T+
Sbjct: 196 AGAAATPPPPVIDRTSIREREDIHDVMTARLHDHVKTTTI 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,460,800
Number of Sequences: 37544
Number of extensions: 438133
Number of successful extensions: 1298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)