Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B08
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.35 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   4.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   4.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   4.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   5.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   7.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   7.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 363 YKLTPTLSCSHSQFIFSLYNTNSVIKTFC 277
           Y+  PTLS S+S ++ S+Y + +   T C
Sbjct: 366 YRQPPTLSESYSSYVNSMYASGAQFATPC 394


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 449 DQKTISKMAAVAANRLLSESAIFQRSLDPTN*HRHSAVRTHNSY 318
           + KT  K A +++N L S S  FQR+    + +  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 449 DQKTISKMAAVAANRLLSESAIFQRSLDPTN*HRHSAVRTHNSY 318
           + KT  K A +++N L S S  FQR+    + +  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 449 DQKTISKMAAVAANRLLSESAIFQRSLDPTN*HRHSAVRTHNSY 318
           + KT  K A +++N L S S  FQR+    + +  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 449 DQKTISKMAAVAANRLLSESAIFQRSLDPTN*HRHSAVRTHNSY 318
           + KT  K A +++N L S S  FQR+    + +  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 449 DQKTISKMAAVAANRLLSESAIFQRSLDPTN*HRHSAVRTHNSY 318
           + KT  K A +++N L S S  FQR+    + +  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 311 SENMNCECEQLSVGVSL*GQVNVEIWQIPRE 403
           S+N+   CE   + + L G +N +++Q P E
Sbjct: 50  SDNVFANCELQKLRLLLQGNINNQLFQTPCE 80


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 449 DQKTISKMAAVAANRLLSESAIFQRSLDPTN*HRHSAVRTHNSY 318
           + KT  K A +++N L S S  FQR+    + +  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 449 DQKTISKMAAVAANRLLSESAIFQRSLDPTN*HRHSAVRTHNSY 318
           + KT  K A +++N L S S  FQR+    + +  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSY 245


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 115 RTYRDTLETNNQISNGFLFHENIRVNLLKCC 207
           + YR  +   N+I    LF  N R+  L  C
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFC 270


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 670 KKYSRWIGG 696
           KKYS WIGG
Sbjct: 110 KKYSVWIGG 118


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 214 SCYSFSLQLTQVFQSSSFSY-NTKCLD 291
           S YSF  +L  +F SSS  + +T  LD
Sbjct: 477 SIYSFLERLNLIFMSSSLQWSSTHTLD 503


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 214 SCYSFSLQLTQVFQSSSFSY-NTKCLD 291
           S YSF  +L  +F SSS  + +T  LD
Sbjct: 515 SIYSFLERLNLIFMSSSLQWSSTHTLD 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,764
Number of Sequences: 438
Number of extensions: 4584
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)