Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B07
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385...    30   2.3  
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348...    30   2.3  
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406...    28   7.0  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    28   7.0  

>12_01_0486 +
           3854889-3855014,3855897-3856089,3856206-3856310,
           3856541-3856629,3856720-3856872,3857047-3857181,
           3857293-3857459,3858193-3858287,3858495-3858868,
           3859101-3859374,3859464-3859531
          Length = 592

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 126 TIMCCLGVGVFCGTM-YRGSALSI 194
           T+M CLG+G+ CG + Y GS L +
Sbjct: 559 TLMFCLGLGILCGAIGYLGSTLFV 582


>02_01_0485 +
           3487578-3487635,3488281-3488399,3488600-3488698,
           3488795-3488851,3488954-3489109,3489227-3489311,
           3489489-3489579,3489693-3489857,3489923-3490045,
           3490244-3490319,3490486-3490633,3490769-3491934,
           3492041-3492231,3492321-3492513
          Length = 908

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = -2

Query: 295 INPSAAMHALPTMNIICRASIQINRKWNTSSNIRMESADPRYMVPQNTPTPRQHIIVAIR 116
           ++P +  H  P  NI C +   ++   +T  +   E+A     VP+ TP P      + R
Sbjct: 586 VSPFSQQHNFPDTNISCLSPSNVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKR 645

Query: 115 VACGTRVRQA*H 80
           VA  + +    H
Sbjct: 646 VAVESTITSRPH 657


>11_01_0518 +
           4057428-4057538,4059609-4059801,4059921-4060025,
           4060259-4060347,4060424-4060576,4060754-4060888,
           4061241-4061407,4062129-4062223,4062367-4062740,
           4062903-4063176,4063806-4063822
          Length = 570

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 126 TIMCCLGVGVFCGTM 170
           T+M CLG+G+ CGT+
Sbjct: 554 TLMFCLGLGILCGTV 568


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 126 TIMCCLGVGVFCGTM-YRGSAL 188
           T+M CLG+G  CG + Y GS L
Sbjct: 551 TLMFCLGLGTLCGKLFYTGSML 572


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,692,808
Number of Sequences: 37544
Number of extensions: 441364
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)