Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B06
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   0.96 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   5.1  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    24   8.9  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    24   8.9  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 7    ADSRPSKXQYEYSAPDGTP---VKFTYTADENGYQPQ-SELLPVAPPMP 141
            ++S P      Y+  +GT    V+ T T DE+G+Q Q +    VA P+P
Sbjct: 942  SESSPESQSTHYNDYEGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIP 990



 Score = 25.0 bits (52), Expect = 5.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 46   APDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPK 189
            A +G+ V  T   D N     S +  V+   P  + R+ DY+++H P+
Sbjct: 1124 ALEGSAVSKTDDVD-NVVSGHSNVNGVSKSRPNIVERSEDYVISHLPE 1170


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 191 PKP*KSYKSRRFRAQRPPPKKSGLYFEHHTLSISI 295
           PKP KS ++  F    PPP  +G     H L+I+I
Sbjct: 50  PKP-KSIEAPMFPILLPPPNITGKLHIGHALTITI 83


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 216 PEDSEHNDPRQRKVDFISSTIRYQYQ*HR*SNE 314
           PE  E N P +RK D I  +  Y  +  R  N+
Sbjct: 650 PEALEVNTPIKRKADLIQPSYNYDGEKRRKEND 682


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 210 INPEDSEHNDPRQRKVDFISS 272
           I  E S +ND  +RK+DF+SS
Sbjct: 401 IKRELSYYNDATKRKLDFMSS 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,442,880
Number of Sequences: 5004
Number of extensions: 26517
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)