Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B06
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0003 - 12238606-12239336,12239550-12239804,12239886-122399...    29   1.2  
06_03_0730 - 23948801-23949079,23949528-23949588,23949828-239499...    29   2.2  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    28   3.8  
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    27   6.6  
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748...    27   6.6  
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004...    27   8.7  
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    27   8.7  

>07_03_0003 -
           12238606-12239336,12239550-12239804,12239886-12239988,
           12240393-12240713,12241427-12241480,12242134-12242274
          Length = 534

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = +1

Query: 139 PEAIRRAIDYILAHPPKTETVKKL*IQKIQSTTTPAKEKWTLFRAPYVININNIDSQMNL 318
           PEA  R++   +  P KT  +KKL I    +  T A +    F AP V N+  I  Q+NL
Sbjct: 68  PEAFFRSVKPRVVAPQKTLPIKKLAIPVPPTFKTMADKTLREFAAPSVDNV-AIGPQINL 126


>06_03_0730 -
           23948801-23949079,23949528-23949588,23949828-23949954,
           23950449-23950485,23950987-23951061,23951489-23951598,
           23952700-23952754,23952833-23952949,23953201-23953355,
           23953577-23953634,23954239-23954460
          Length = 431

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 10  DSRPSKXQYEYS---APDGTPVKFTYTADENGYQPQSELLPVAPPMPEAI 150
           D+R  K + + S   A  G      Y +D  G  P+S L P  PP P+ +
Sbjct: 363 DARRKKEEQQSSHGGATTGATEGSNYRSDHFGASPRSALAPPPPPSPDLV 412


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +2

Query: 68  SSRIQLTRTDTNHRVSYFQLLLQCLKPSVALLTTFSLTH 184
           +S  Q ++++ +H  S  Q+  +C +PS+A +  +S+TH
Sbjct: 852 TSEFQQSKSNRDHHNSR-QVDRECTQPSIASMANYSVTH 889


>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 85   DENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETV 201
            +E  Y P S L+  A  +  AIRR +    A PP    +
Sbjct: 1869 EEKMYVPNSRLMSCASLLSAAIRRGVAGCRASPPSASAI 1907


>11_04_0154 +
           14172294-14172459,14172993-14173054,14174781-14174859,
           14174964-14175164,14175420-14175610
          Length = 232

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 179 THLRPKP*KSYKSRRFRAQRPPPKKSGLYFEHHTLSISI 295
           THL P P +  ++R+ R   P P  SGL F H  L I +
Sbjct: 25  THL-PGPRRKPRARQGRPT-PRPDPSGLQFSHAVLEIGV 61


>07_03_1192 +
           24698355-24698433,24699312-24699391,24700027-24700483,
           24700641-24700794,24700878-24701155,24701225-24701517
          Length = 446

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 74  RIQLTRTDTNHRVSYFQLLLQCLKPSVALLTT-FSLTHLRPKP 199
           R+++T T+ N+R++Y Q  L    PS   LTT FS  +    P
Sbjct: 303 RVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLNP 345


>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 151 RRAIDYILAHPPKTETVKKL*IQKIQSTTTPAKEK 255
           RR +  +L HP     V  + + ++ STT P   K
Sbjct: 493 RRIVSLLLLHPASPHPVAAISLGRLLSTTAPVSSK 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,523,550
Number of Sequences: 37544
Number of extensions: 180904
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)