Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B06
         (438 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.       33   0.43 
AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein.     33   0.43 
U29895-1|AAC73008.1|  393|Homo sapiens 4-hydroxyphenylpyruvate-d...    30   3.0  
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    29   7.0  
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    29   7.0  
BC036099-1|AAH36099.1|  716|Homo sapiens ARNT2 protein protein.        29   9.3  
AF185610-1|AAG15310.1|  706|Homo sapiens aryl-hydrocarbon recept...    29   9.3  
AB002305-1|BAA20766.2|  716|Homo sapiens KIAA0307 protein.             29   9.3  

>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
          Length = 1192

 Score = 33.1 bits (72), Expect = 0.43
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 31  QYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPP 186
           QY+Y  P      F+ +   N   P+ + +P  PPMP + +  +      PP
Sbjct: 50  QYQYEPPSAPSTTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPP 101


>AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein.
          Length = 1374

 Score = 33.1 bits (72), Expect = 0.43
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 31  QYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPP 186
           QY+Y  P      F+ +   N   P+ + +P  PPMP + +  +      PP
Sbjct: 50  QYQYEPPSAPSTTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPP 101


>U29895-1|AAC73008.1|  393|Homo sapiens
           4-hydroxyphenylpyruvate-dioxygenase protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 94  GYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETV 201
           GY+P + + P+ P +P+     ID+I+ + P  E V
Sbjct: 159 GYEPPAFMDPLLPKLPKCSLEMIDHIVGNQPDQEMV 194


>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +1

Query: 19   PSKXQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTET 198
            P+   Y  S+P  TP   TYT     Y P S     +P  P+    +  Y  + P  T T
Sbjct: 1799 PTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSP--SYSPTSPKYTPTSPSYSPSSPEYTPT 1856

Query: 199  VKK 207
              K
Sbjct: 1857 SPK 1859


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +1

Query: 19   PSKXQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTET 198
            P+   Y  S+P  TP   TYT     Y P S     +P  P+    +  Y  + P  T T
Sbjct: 1799 PTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSP--SYSPTSPKYTPTSPSYSPSSPEYTPT 1856

Query: 199  VKK 207
              K
Sbjct: 1857 SPK 1859


>BC036099-1|AAH36099.1|  716|Homo sapiens ARNT2 protein protein.
          Length = 716

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 4   PADSRPSKXQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAP 132
           P    PS+     S+P G     TY AD + Y P S     +P
Sbjct: 582 PGQQIPSQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP 624


>AF185610-1|AAG15310.1|  706|Homo sapiens aryl-hydrocarbon receptor
           nuclear translocator 2 protein.
          Length = 706

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 4   PADSRPSKXQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAP 132
           P    PS+     S+P G     TY AD + Y P S     +P
Sbjct: 571 PGQQIPSQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP 613


>AB002305-1|BAA20766.2|  716|Homo sapiens KIAA0307 protein.
          Length = 716

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 4   PADSRPSKXQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAP 132
           P    PS+     S+P G     TY AD + Y P S     +P
Sbjct: 581 PGQQIPSQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP 623


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,014,161
Number of Sequences: 237096
Number of extensions: 1105948
Number of successful extensions: 2910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2903
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)