Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B06
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    64   5e-13
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   0.64 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   0.64 

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 64.5 bits (150), Expect = 5e-13
 Identities = 27/58 (46%), Positives = 38/58 (65%)
 Frame = +1

Query: 22  SKXQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTE 195
           S+    Y+APDG  V  TY ADENG+Q Q   +P APP+P  I+RA+++  AHP + +
Sbjct: 71  SQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDD 128


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 134 GGATGSNSLCGWYPFSSA 81
           GGA G+ SLC  YP   A
Sbjct: 122 GGAAGATSLCFVYPLDFA 139


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 134 GGATGSNSLCGWYPFSSA 81
           GGA G+ SLC  YP   A
Sbjct: 122 GGAAGATSLCFVYPLDFA 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,943
Number of Sequences: 438
Number of extensions: 2248
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)