Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B05
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    28   0.092
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    28   0.12 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.6  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 0.092
 Identities = 33/185 (17%), Positives = 76/185 (41%)
 Frame = +2

Query: 107 PGPTPLPIVGNLLSVLWESRKFKCHHLIWQSWSQKYGNLLGLRLGSINVVVVTGIELIRE 286
           PGP  LP++GN L  L+ S       ++ +  ++ + +++ + +G   V+ +     +  
Sbjct: 45  PGPPALPLIGNALD-LFGSPDAMFSQVLKK--AENFKDVVKIWVGPKLVICLIDPRDVEI 101

Query: 287 VSNREVFEGRPDGFFYTMRSFGKKLGLVFSDGPTWHRTRRFVLKYLKNFGYNSRFMNVYI 466
           + +  V+  +   + +     G   GL+ S G  W   R+ +     +      F++++ 
Sbjct: 102 ILSSNVYIDKSTEYRFFKPWLGD--GLLISTGQKWRNHRKLIAPTF-HLNVLKSFIDLFN 158

Query: 467 GEECEALVQLRLADAGEPILVNQMFHITIVNILWRLVAGKRYDLXDQRLKKLCSLVMRLF 646
                 + ++R  +  E    N M  +T V+IL     G      D    +    VM++ 
Sbjct: 159 ANARSVVEKMRKENGKEFDCHNYMSELT-VDILLETAMGVSKPTRDHNAFEYAMAVMKMC 217

Query: 647 KLVDM 661
            ++ +
Sbjct: 218 DILHL 222


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
 Frame = +2

Query: 107 PGPTPLPIVGN--LLSVLWESRKFKCHHLIWQSWSQKYGNLLGLR-LGSINVVVVTGIEL 277
           PGP  LPI G   + S +   +  K H   ++  +Q+YG L     L +  ++ V   + 
Sbjct: 54  PGPFSLPIFGTRWIFSCIGYYKLNKIHDA-YKDLNQRYGALCKEEALWNFPMISVFSRQD 112

Query: 278 IREVSNREV-FEGRP-----DGFFYTMRSFGKKLGLVFSDGPTWHRTR 403
           I  +  R   +  RP       +  T R     LGLV   G TWH  R
Sbjct: 113 IETIIRRNSRYPLRPPQEVISHYRRTRRDRYTNLGLVNEQGQTWHDLR 160


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 320 DGFFYTMRSFGKKLGLVFSDGPTWHRTRRFVLKYLKNFGY 439
           D +FY   +  + L  + ++ PTW    R VL  L   GY
Sbjct: 28  DYYFYDYSNRTQALESIIANIPTWLSFIRIVLVILLRAGY 67


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 324 PSGLPSNTSRFETSLMSSIPVT 259
           P  +  ++S+FE  LM+ +P T
Sbjct: 62  PGHINCDSSKFEEDLMNKLPTT 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,862
Number of Sequences: 438
Number of extensions: 6619
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)