Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B04
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    29   2.5  
08_02_0841 - 21749599-21749978,21750409-21753367                       29   3.3  
05_02_0093 + 6530930-6531048,6531077-6531377                           28   7.5  
03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405     28   7.5  
10_02_0141 + 5761931-5762020,5762170-5762201,5762453-5762604,576...    27   9.9  

>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +1

Query: 220 CILEKGQCTAEGKELKSHIKEALETNCAKCTKAQKGGTEKM--IGHLINH-EAEFWEELK 390
           C L +G+   +G  L    +E L  N   C    + G   M   G L  H EA F  E  
Sbjct: 60  CPLCRGE--VKGYTLVEPAREQLNQNKRSC---MQDGCSYMGSYGELCKHMEATFIPEFT 114

Query: 391 AKYDPTNEFTKKYE 432
           A+YD  NEFT   E
Sbjct: 115 ARYDLCNEFTNGAE 128


>08_02_0841 - 21749599-21749978,21750409-21753367
          Length = 1112

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 480 QLISCNKIYLVDLIFNS 530
           Q+ SC+K+YL+DL FNS
Sbjct: 563 QISSCSKLYLLDLSFNS 579


>05_02_0093 + 6530930-6531048,6531077-6531377
          Length = 139

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 200 SSFPTYIASSKRANVPQKARNLNLTSRKLSRP 295
           +SFP   ASS  A  P++ R L+L  R+L  P
Sbjct: 37  TSFPCLHASSGSAAFPKRRRALSLIGRRLQYP 68


>03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405
          Length = 410

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 415 TRWWGRIWPSAPPR 374
           TRWW R+ P  PPR
Sbjct: 117 TRWWARLPPRPPPR 130


>10_02_0141 +
           5761931-5762020,5762170-5762201,5762453-5762604,
           5763688-5763770,5764689-5764766,5764884-5764979,
           5765076-5765345
          Length = 266

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 134 ALNSTQTNMTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKLSRPTVLNAP 313
           +LN ++ ++ +S   ++     SS P   A+    N P  A N N  S  LS+       
Sbjct: 166 SLNPSRASVDVSGMNTAQHATTSSVPQQAAAQNPQNAPSPANNANHDSSGLSQQQRPADA 225

Query: 314 KRKR 325
           +RKR
Sbjct: 226 ERKR 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,419,670
Number of Sequences: 37544
Number of extensions: 332193
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)