Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B04
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5549| Best HMM Match : PT (HMM E-Value=1.9)                         33   0.20 
SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 28   5.8  
SB_58747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)                      28   7.7  

>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
          Length = 282

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 143 STQTNMTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKLSRPTVLNAPKR- 319
           S +TN+  S  TSS  ++ +S  T    S +       +    TS K SR T LNA ++ 
Sbjct: 8   SLKTNLKTSRKTSSKTSLKTSPKTRRKKSPKTTPKTSLKTSRKTSLKTSRKTSLNASRKT 67

Query: 320 -KRVEPKR*LVTSSTTKPNS 376
            ++   KR L T+  T P +
Sbjct: 68  SRKTSLKRSLKTNPKTSPKT 87


>SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +1

Query: 298 CAKC---TKAQKGGTEKMIGHLINHEAEFWEELKAK 396
           C KC       +G T  +I HL NH  + +EE   K
Sbjct: 51  CKKCFAVVATSRGNTSNLIAHLRNHHPDLYEEFNTK 86


>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +1

Query: 208  PYVHCILEKGQCTAEGKELKSHIKEALETNCAKCTKAQKGGTEKMIGH--LINHEAEFWE 381
            PY   ++ +    A+G  L SH+KE L T+   C     G  E  + H  L     E ++
Sbjct: 961  PYSPYLIAEYIHVAQGVHLPSHVKEVL-TDGVFCLLDLCGDHETALLHATLSKGSRELFK 1019

Query: 382  ELKAKYDPTNEFTKK 426
             L  +Y+  ++FT K
Sbjct: 1020 TLNEEYNKYHKFTGK 1034


>SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 143 STQTNMTLSIWTSSYLTVGSSFPT-YIASSKRANVPQKARNLNLTSRKLSRPTVLNAPKR 319
           +TQ +   S    SY++V  S  T Y  SSK A+ P + +  + T+R + +PT    P R
Sbjct: 58  ATQESQNNSYMYLSYVSVSPSPKTGYQVSSKFAHKPTRPQTDSSTNRLVHKPT-RPQPTR 116

Query: 320 KRVEPKR*LVTSSTTKPNS 376
            + +     +    T+P +
Sbjct: 117 PQTDSSTNRLVHKPTRPQT 135


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 239 NVPQ-KARNLNLTSRKLSRPTVLNAPKR--KRVEPKR*LVTSSTTKPNS 376
           N P+ K +    TSRK S+ T LNA ++  ++   KR L TS  T P +
Sbjct: 308 NKPEDKQQTTPKTSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKTSPKT 356


>SB_58747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 170 IWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKLSRP 295
           +WT++Y+ V   FPT I   +  N    A +L L++  +S P
Sbjct: 20  MWTTTYILVTELFPTVIRCMRALNAISVATSL-LSNTNVSTP 60


>SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)
          Length = 347

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 238 QCTAEGKELKSHIKEALETNCAKCTKAQKGGT 333
           Q   E + L+   +EA  T C KC+ A++G +
Sbjct: 149 QMREEKRYLRDMSREAATTGCVKCSSARRGSS 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,451,030
Number of Sequences: 59808
Number of extensions: 396058
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)