Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_B03
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 37 0.004
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 28 1.7
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 3.0
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.0
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 26 7.0
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 26 7.0
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 9.3
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 25 9.3
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 36.7 bits (81), Expect = 0.004
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Frame = +1
Query: 427 KTSEDNHEYERIKQDLYEALSILPNKTHPFVKGKFEPHIVHEINKKKDFGEYKPFEFSEI 606
KT E N ++ DLY+ +PN T P V E V + K K +
Sbjct: 106 KTEEYNKIISKVTNDLYQYCLAVPNTTLPTVPVGPEDKAV-VVQKIGSPLVKKTGSLKDH 164
Query: 607 TRLLNL-MRIEKLGHTCGHKSYYFFGELAELEEAIIKYTVKKLLDDGFQLISVPDILAXN 783
++ N + +E GH Y G++A LE AI Y + + G+ + P I+ +
Sbjct: 165 LQIANEGINLEDAAQASGHSFCYTTGDIALLEMAITNYAMDFAISKGWCPVIPPTIVRTD 224
Query: 784 V 786
+
Sbjct: 225 I 225
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.9 bits (59), Expect = 1.7
Identities = 32/116 (27%), Positives = 53/116 (45%)
Frame = +1
Query: 214 VKMLYISSLIQNYRIVYSTKGFKRFFSQIYPNYNLQYYCNPKNHEEIKQNIKIRKGVGDI 393
+K YISSL + + + + + SQ + C PK IK N+K G+
Sbjct: 1 MKFSYISSLPKGHNHICCKQAGRFLSSQADLKKYSESLCLPKTSFPIKPNVK-----GNN 55
Query: 394 DRVMQLYKIITKTSEDNHEYERIKQDLYEALSILPNKTHPFVKGKFEPHIVHEINK 561
++ +K IT D +E++ K++L + S + PF G+ HI H +NK
Sbjct: 56 EK---YFKSIT---SDLYEWQ--KENLNKEDSFVLLDGPPFANGRL--HIGHALNK 101
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 289 FSQIYPNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQ 468
FS I N + N +N +E I I + V+Q I+ ++ED+HE ++ +
Sbjct: 509 FSNISKKRNSEE-ANDEN-DETNLKIPIPEKKRKFQEVLQSKNILVSSTEDSHEPVKVTE 566
Query: 469 DLYEALSI 492
D A+ +
Sbjct: 567 DSQTAIHV 574
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 370 IRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQDLYEA 483
+RKG+ D + Q+ KI+ K ++ +EY + + YE+
Sbjct: 10 LRKGIFK-DEITQIEKILLKMEDNTYEYVDVFLEKYES 46
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 592 QKACILQNLSFYLFHGQCEVQTFLLQKDGFYL--VRYLALHINPALFFRIHDY 440
Q C L + FY G+ + F L G L + L+L I AL F +H+Y
Sbjct: 397 QGKCYLASAVFYFITGKFLLSWFNLGSHGLILANILNLSLRICFALRFILHNY 449
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 25.8 bits (54), Expect = 7.0
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 430 TSEDNHEYERIKQDLYEALSILPNKTH-PFVKG-KFEPHIVHEINKKKDFGEYKPFEFSE 603
+ ++ +Y+ + L E + I+ ++ P G K E H++ INK + F F E
Sbjct: 3 SQQEKKDYDEEQLRLMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDE 62
Query: 604 ITRLLNLMRIEK 639
RLL R E+
Sbjct: 63 QNRLLLQQRAEE 74
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 676 FGELAELEEAIIKYTVKKLLDD 741
FGE E+ E I T+ +LLDD
Sbjct: 366 FGEFLEIIEEFICQTIDRLLDD 387
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 334 PKNHEEIKQNIKIRKGVGDID 396
P +HEE+K+ +KIR D+D
Sbjct: 355 PYSHEEVKEILKIRCQEEDVD 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,171
Number of Sequences: 5004
Number of extensions: 54570
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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