Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_B03
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 76 3e-14
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 76 3e-14
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 32 0.40
U43283-8|AAC69017.1| 223|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF022975-5|AAB70672.1| 292|Caenorhabditis elegans Serpentine re... 28 6.6
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 28 8.7
U50309-3|AAG24138.2| 343|Caenorhabditis elegans Seven tm recept... 28 8.7
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 75.8 bits (178), Expect = 3e-14
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Frame = +1
Query: 304 PNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSE----------DNHEY 453
P+ N ++ + KN E I++NI RKGVGDID+V + + +I K + +Y
Sbjct: 43 PDLNFEFLLDEKNLEAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKY 102
Query: 454 ERIKQDLYEALSILPNKTHPFVKGKFEPHIVHEINKKKDFGEYKPFEFSEITRLLNLMR- 630
+++ +LY+ ++PN T V E + ++GE + E +L+ R
Sbjct: 103 KQLWDELYDEAILIPNMTQDGVPRGSE----DQAKIVAEWGEKREDECLTAEKLVQTWRS 158
Query: 631 IEKLGHTCGHKSYYFFGELAELEEAIIKYTVKKLLDDGFQLISVPDILAXNV 786
+ G +SY F G LA LE+A++ Y +++ GF+ I+VPDI++ V
Sbjct: 159 LLHPTDASGQRSYVFLGALASLEKALLDYAHERVCALGFRPITVPDIVSGEV 210
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 75.8 bits (178), Expect = 3e-14
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Frame = +1
Query: 304 PNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSE----------DNHEY 453
P+ N ++ + KN E I++NI RKGVGDID+V + + +I K + +Y
Sbjct: 43 PDLNFEFLLDEKNLEAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKY 102
Query: 454 ERIKQDLYEALSILPNKTHPFVKGKFEPHIVHEINKKKDFGEYKPFEFSEITRLLNLMR- 630
+++ +LY+ ++PN T V E + ++GE + E +L+ R
Sbjct: 103 KQLWDELYDEAILIPNMTQDGVPRGSE----DQAKIVAEWGEKREDECLTAEKLVQTWRS 158
Query: 631 IEKLGHTCGHKSYYFFGELAELEEAIIKYTVKKLLDDGFQLISVPDILAXNV 786
+ G +SY F G LA LE+A++ Y +++ GF+ I+VPDI++ V
Sbjct: 159 LLHPTDASGQRSYVFLGALASLEKALLDYAHERVCALGFRPITVPDIVSGEV 210
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 538 HIVHEINKKKDFGEYKPFEFSEITRLLNLM 627
H+V INK KD+ ++P + +TR+ L+
Sbjct: 76 HVVRLINKAKDYSSFQPLDLDTVTRISKLV 105
>U43283-8|AAC69017.1| 223|Caenorhabditis elegans Hypothetical
protein T25G12.1 protein.
Length = 223
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/94 (24%), Positives = 41/94 (43%)
Frame = +1
Query: 241 IQNYRIVYSTKGFKRFFSQIYPNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKI 420
IQ + +GFK S Y+ PK E ++N +IR G D+ V +
Sbjct: 43 IQKAMEIEDNEGFKTPVSTPKRRYSTTKKMTPKPLPEKQRNCRIRIGFLDLFSVETEAIV 102
Query: 421 ITKTSEDNHEYERIKQDLYEALSILPNKTHPFVK 522
+ ++ N + + + E ++L +K + FVK
Sbjct: 103 VPSYADANIVVDEMVEKFPEFKAVLASKDNFFVK 136
>AF022975-5|AAB70672.1| 292|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 13 protein.
Length = 292
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 606 YFTEFKRLVFSKIFLFIYFMDNVRFKLS 523
Y+T K +VF+ IFLF +F+ + F L+
Sbjct: 168 YWTTHKSIVFALIFLFAFFLCSKLFMLN 195
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 VYSTKGFKRFFSQIYPNYNLQYYCNPKNHEEIKQ--NIKIRKGVGDIDRVMQLYKIITKT 432
V+ ++ +K + LQY +++EE Q +I + + + +L K I K
Sbjct: 44 VHRSETYKMEIEEANKRLRLQYEALQRDYEETMQERSIVLEENSRQNEERDRLQKEIEKM 103
Query: 433 SEDNHEYERIKQDLYEALSIL 495
ED+ E +KQ L +L
Sbjct: 104 KEDSEEVAALKQKLENTRRLL 124
>U50309-3|AAG24138.2| 343|Caenorhabditis elegans Seven tm receptor
protein 145 protein.
Length = 343
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 488 LSASYKSCFILSYS*LSSEVFVIILYNCITLSISPTPFRILIFCF 354
L+ Y +CF L S LS++ F L C S+S RIL + F
Sbjct: 87 LTCLYCACFALVISLLSAQFFYRFLAVCKPHSLSHGEERILFYLF 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,791,313
Number of Sequences: 27780
Number of extensions: 284003
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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