Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_B02
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 28 1.8
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 27 2.4
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 4.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 5.6
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 26 7.4
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 7.4
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 7.4
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 7.4
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 9.8
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/66 (24%), Positives = 26/66 (39%)
Frame = -3
Query: 325 YFFPQANKHQFSISFYKLSYEHIFFTRHINL*SFIRLRIPANCFVFEEVLVWGATSFTVH 146
YF N S + Y + E + +H + P F F+ + +W AT F+
Sbjct: 114 YFNENDNAFLISTNAYSAAQERLHIWKHEYQEALSLHPSPTERFTFD-LYIWSATVFSSR 172
Query: 145 CFHKEM 128
CF +
Sbjct: 173 CFSSNL 178
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 689 AISIQILLCSXAPALFXAKSXFLWYSLYAWGCP 787
A++ LL P +F KS W+ +AW P
Sbjct: 94 ALNCMRLLTRLMPIIFEDKSMLEWFDYFAWTVP 126
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 4.3
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Frame = +2
Query: 170 PDQYLLKNETVCWDSQTNETSQ-INMPCKKYV--FIRKFI--ERDGKLVL-----ISLGK 319
PD + +ET+C SQ + +SQ I C ++ +F+ DGKL S K
Sbjct: 322 PDMFSRPSETICLSSQVDSSSQCIPATCLSFIPENNMEFLVGAEDGKLQRGYRSDYSETK 381
Query: 320 EIGPLNVSFCINDVAVGERRLNLSIIQNV 406
+ P NVS+ ++V + + S QNV
Sbjct: 382 AVQPSNVSYEGHNVFISGIDVMTSNSQNV 410
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = -1
Query: 807 MHIVXTAGHPQAYKEYHKKXLLAXNSAGAXEQRRICIEIAFDQKKLLIRKKYARNPRTAH 628
+H++ KEYH+ +A A + C E++ + KL+ ++ N
Sbjct: 2088 LHLILNNFSDALLKEYHQGIFIALVMVLANDSEPHCREMSAELIKLVYQRADNENFNLIR 2147
Query: 627 QLISEY 610
QL+S +
Sbjct: 2148 QLLSHW 2153
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 772 CLGVSCCXHNMHGNC 816
CL V CC H H NC
Sbjct: 202 CLHVYCCKHLAHVNC 216
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 352 NTKTNIQWPYFFPQANKHQFSISFYKLSYEHIFFTR 245
N TN + YF A+ H F+++ YK S ++ F++
Sbjct: 126 NVTTNAK-KYFSSLADGHNFTLTLYKFSLDNQTFSQ 160
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 333 SGPISFPKLIST-NFPSLSINFLMNTY 256
SG SF K+I+ FPS INF+ + Y
Sbjct: 91 SGGKSFAKVINCLRFPSFLINFIFSVY 117
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 653 YFFLISSFFWSNAISIQILLCSXAPALF 736
Y+++ SSF W ++ +I+++ + ALF
Sbjct: 278 YYYIRSSFSWEDSYTIEVVQILLSVALF 305
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 414 VTATFWIIDKLRRLSPTATSLIQKLTFSGPISFPKLISTN 295
+T TF I + S ++SLI K T GP+ + + N
Sbjct: 1004 ITETFLQITPTQSRSNVSSSLIGKETVEGPVKLSEYVLDN 1043
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,052
Number of Sequences: 5004
Number of extensions: 72075
Number of successful extensions: 269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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