Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_B02
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 38 0.009
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 38 0.009
U80446-6|AAB37805.2| 783|Caenorhabditis elegans Hypothetical pr... 31 1.00
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein. 29 3.0
Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z99771-1|CAB16919.2| 910|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z66511-8|CAA91319.2| 910|Caenorhabditis elegans Hypothetical pr... 28 7.0
U63557-1|AAC47301.1| 558|Caenorhabditis elegans transmembrane r... 28 7.0
AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell... 28 7.0
AC024201-1|AAF36028.1| 558|Caenorhabditis elegans Abnormal cell... 28 7.0
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
protein 2 protein.
Length = 1338
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/115 (22%), Positives = 51/115 (44%)
Frame = +2
Query: 467 VSVIFLAITVAIYSSFSNLRDLFGKSIISYCGSMXXXXXXXXXXKLMAYSDMSWCAVRGF 646
+S++ LA++V +++ F NL+++ + C + + + + C V
Sbjct: 907 ISIVCLALSVCVFTFFRNLQNVRNSIHRNLCLCLLIAELVFVIG-MDRTGNRTGCGVVAI 965
Query: 647 LAYFFLISSFFWSNAISIQILLCSXAPALFXAKSXFLWYSLYAWGCPAVLTICMA 811
L ++F +SSF W Q+ + FL+Y L+ +G PAV+ A
Sbjct: 966 LLHYFFLSSFCWMLLEGYQLYMMLIQVFEPNRTRIFLYY-LFCYGTPAVVVAISA 1019
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/115 (22%), Positives = 51/115 (44%)
Frame = +2
Query: 467 VSVIFLAITVAIYSSFSNLRDLFGKSIISYCGSMXXXXXXXXXXKLMAYSDMSWCAVRGF 646
+S++ LA++V +++ F NL+++ + C + + + + C V
Sbjct: 907 ISIVCLALSVCVFTFFRNLQNVRNSIHRNLCLCLLIAELVFVIG-MDRTGNRTGCGVVAI 965
Query: 647 LAYFFLISSFFWSNAISIQILLCSXAPALFXAKSXFLWYSLYAWGCPAVLTICMA 811
L ++F +SSF W Q+ + FL+Y L+ +G PAV+ A
Sbjct: 966 LLHYFFLSSFCWMLLEGYQLYMMLIQVFEPNRTRIFLYY-LFCYGTPAVVVAISA 1019
>U80446-6|AAB37805.2| 783|Caenorhabditis elegans Hypothetical
protein F56A3.1 protein.
Length = 783
Score = 31.1 bits (67), Expect = 1.00
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -1
Query: 255 FLQGILICEVSFVCE-SQQTVSFLRRYWSGGQHLLLFTASIKKCKNK*PRTLFN*IKFI 82
F G+ + E++F+ S+ ++ RR+ GG HLL+ ++K +N+ R L + KF+
Sbjct: 541 FSDGLPLSELTFIASISRDSLFNFRRF--GGAHLLIINDPLEKLRNEDGRLLVDDGKFV 597
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
R09H10.5 protein.
Length = 1603
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +2
Query: 134 FMEAVNSKRCCPPDQYLLKNETVCWDSQTNETSQINMPCKKYVFIRKFIERDGKLVLISL 313
F+ +N+K P+ YLLKN DS T +N+P K+Y + F + + K+V S
Sbjct: 1153 FVVEINTKNMILPNSYLLKNIQAFVDS----TDDVNVP-KQYTLV-TFDDTNIKVVASST 1206
Query: 314 GKEI 325
K++
Sbjct: 1207 RKDV 1210
>Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical
protein T23D8.1 protein.
Length = 568
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 629 CAVRGFLAYFFLISSFFWSNAISIQILLCSXAPALFXAKSXFL---WYSLYAWGCPAVLT 799
C+ + YFF +SS W + + L A + A+S ++ WG PAVL+
Sbjct: 309 CSALAVVHYFFFMSSCAWWLVLCLAWFLA--ANLKWGAESIAALSPYFHAMCWGVPAVLS 366
Query: 800 ICMAIVN 820
+ + + N
Sbjct: 367 VTVLVTN 373
>AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein.
Length = 568
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 629 CAVRGFLAYFFLISSFFWSNAISIQILLCSXAPALFXAKSXFL---WYSLYAWGCPAVLT 799
C+ + YFF +SS W + + L A + A+S ++ WG PAVL+
Sbjct: 309 CSALAVVHYFFFMSSCAWWLVLCLAWFLA--ANLKWGAESIAALSPYFHAMCWGVPAVLS 366
Query: 800 ICMAIVN 820
+ + + N
Sbjct: 367 VTVLVTN 373
>Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical
protein H25K10.6 protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 343 TNIQWPYFFPQANKHQFSISFYKLSYEHIFFTRHINL 233
TN FFPQ N+ + SI+FY +Y IF T + L
Sbjct: 119 TNFTSLSFFPQLNRPETSINFYCYTY-GIFITNNSQL 154
>Z99771-1|CAB16919.2| 910|Caenorhabditis elegans Hypothetical
protein D1043.1 protein.
Length = 910
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 510 LLYMATVIARKITDTIIQYPKTVSFGSISVAHVTATFWIIDKLRRL 373
L+ + V+ ++ ++TIIQ P + + S+ WII+K+R L
Sbjct: 676 LVAVRVVLKKQSSETIIQIPPLTTARTCSLFQRERLQWIIEKIRLL 721
>Z66511-8|CAA91319.2| 910|Caenorhabditis elegans Hypothetical
protein D1043.1 protein.
Length = 910
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 510 LLYMATVIARKITDTIIQYPKTVSFGSISVAHVTATFWIIDKLRRL 373
L+ + V+ ++ ++TIIQ P + + S+ WII+K+R L
Sbjct: 676 LVAVRVVLKKQSSETIIQIPPLTTARTCSLFQRERLQWIIEKIRLL 721
>U63557-1|AAC47301.1| 558|Caenorhabditis elegans transmembrane
receptor LIN-17 protein.
Length = 558
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +2
Query: 617 DMSWCAVRGFLAYFFLISSFFWSNAISIQILLC---SXAPALFXAKSXFLWYSLYAWGCP 787
D S+C L YFF ++ W S + L P A S ++ + AWG
Sbjct: 283 DNSYCLASFLLNYFFSTAAALWWLMFSFTLYLSGGRKWVPEGIEACSSYVHF--VAWGLS 340
Query: 788 AVLTICMAIVN 820
++ TI + I N
Sbjct: 341 SLATIIVLIFN 351
>AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell
lineage protein 17,isoform b protein.
Length = 556
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +2
Query: 617 DMSWCAVRGFLAYFFLISSFFWSNAISIQILLC---SXAPALFXAKSXFLWYSLYAWGCP 787
D S+C L YFF ++ W S + L P A S ++ + AWG
Sbjct: 283 DNSYCLASFLLNYFFSTAAALWWLMFSFTLYLSGGRKWVPEGIEACSSYVHF--VAWGLS 340
Query: 788 AVLTICMAIVN 820
++ TI + I N
Sbjct: 341 SLATIIVLIFN 351
>AC024201-1|AAF36028.1| 558|Caenorhabditis elegans Abnormal cell
lineage protein 17,isoform a protein.
Length = 558
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +2
Query: 617 DMSWCAVRGFLAYFFLISSFFWSNAISIQILLC---SXAPALFXAKSXFLWYSLYAWGCP 787
D S+C L YFF ++ W S + L P A S ++ + AWG
Sbjct: 283 DNSYCLASFLLNYFFSTAAALWWLMFSFTLYLSGGRKWVPEGIEACSSYVHF--VAWGLS 340
Query: 788 AVLTICMAIVN 820
++ TI + I N
Sbjct: 341 SLATIIVLIFN 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,909,286
Number of Sequences: 27780
Number of extensions: 409354
Number of successful extensions: 1128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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