Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_B02
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   7.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   7.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   7.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 19/78 (24%), Positives = 33/78 (42%)
 Frame = -1

Query: 279 INFLMNTYFLQGILICEVSFVCESQQTVSFLRRYWSGGQHLLLFTASIKKCKNK*PRTLF 100
           + F M  Y++  ILI  +S+V       +   R   G   +L F     K +N  P+  +
Sbjct: 231 MGFFMMDYYIPSILIVVISWVSFWLHMDASPPRIVLGTNTILTFMTLASKVENSLPKVSY 290

Query: 99  N*IKFIFCLCYIVFV*AS 46
                I+ L   +F+ A+
Sbjct: 291 IKASEIWFLGCTIFLFAA 308


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 472 GHNHTISKNSFFRIYFGCTCD 410
           GH+ T S +SFF    GC  D
Sbjct: 349 GHDTTASGSSFFLAVMGCHPD 369


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 502 YGNRYCQKNNGHNHTISKNSFFRI 431
           Y N Y   NN +N    K  ++ I
Sbjct: 94  YNNNYNNYNNNYNTNYKKLQYYNI 117


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 592 NNKANGIFGYELVCCSR 642
           N+ + G+ G +L+CC R
Sbjct: 104 NDTSIGVDGCDLMCCGR 120


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 592 NNKANGIFGYELVCCSR 642
           N+ + G+ G +L+CC R
Sbjct: 105 NDTSIGVDGCDLMCCGR 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,519
Number of Sequences: 438
Number of extensions: 5500
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)