Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A24
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.52 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.1  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    25   6.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.4  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   8.4  

>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 126 DDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKF-ADYTPEEQQSRL 269
           DD+D E  Y+  +       +L++KN Y+TF  ++F    TP   QS L
Sbjct: 367 DDSDSERSYRRVRDQYLSKPRLSDKNRYSTF--SEFPGQGTPSASQSNL 413


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -1

Query: 284 RQPQSQPALLFLRSIISKFVNAKRSIWILLVQL 186
           R  ++Q ALL L  I SKF N   + W LLVQL
Sbjct: 866 RDFRAQLALLVLFWISSKFGNIIDASWPLLVQL 898


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 134 RQRAALSIIQETLGRDKPIEREESIYYVW 220
           R+RAALS +        P+  +ES +Y W
Sbjct: 154 RKRAALSKLGHPAFHFLPMNNKESFHYAW 182


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 144  LHYQSFKKHLAEINQLNEKNPY 209
            +H   FK H+A +      NPY
Sbjct: 1295 MHIDCFKNHIATVTLATRANPY 1316


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 108 HNRE-YKDDADRELHYQS---FKKHLAEINQLNEKNPYTTFGIN 227
           HN + + DD D + + ++   F+K +   N +N+K+PY +  I+
Sbjct: 221 HNDDGFWDDFDIDFNNETESIFRKKIRSPNTINQKHPYISSTIS 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,725
Number of Sequences: 5004
Number of extensions: 30709
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)